EY661766

Overview
NameEY661766
Unique NameEY661766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.483e-17
Identity = 54/183 (29.51%), Postives = 95/183 (51.91%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 701
            +Y+ N         +K+LF   G  + V+++  + GK++ F FV+    E+AQ AV++ + +E++G+ I       +VE   + K+   Q       R     LYV NL   +    LR+ FS      S+KV+ E   GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.483e-17
Identity = 54/183 (29.51%), Postives = 95/183 (51.91%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 701
            +Y+ N         +K+LF   G  + V+++  + GK++ F FV+    E+AQ AV++ + +E++G+ I       +VE   + K+   Q       R     LYV NL   +    LR+ FS      S+KV+ E   GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.483e-17
Identity = 54/183 (29.51%), Postives = 95/183 (51.91%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 701
            +Y+ N         +K+LF   G  + V+++  + GK++ F FV+    E+AQ AV++ + +E++G+ I       +VE   + K+   Q       R     LYV NL   +    LR+ FS      S+KV+ E   GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 54/183 (29.51%), Postives = 94/183 (51.37%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 701
            +Y+ N         +K LF   G  + V+++  + GK++ F FV+    E+AQ AV++ + +E++G+ I       +VE   + K+   Q       R     LYV NL   +    LR+ FS      S+KV+ E   GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 54/183 (29.51%), Postives = 94/183 (51.37%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 701
            +Y+ N         +K LF   G  + V+++  + GK++ F FV+    E+AQ AV++ + +E++G+ I       +VE   + K+   Q       R     LYV NL   +    LR+ FS      S+KV+ E   GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: NUCL_CHICK (Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.161e-17
Identity = 51/181 (28.18%), Postives = 98/181 (54.14%), Query Frame = 3
Query:  141 EQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 683
            ++ +K+   R ++V NLP+  +  E+KN+F      ++V ++ +K G ++  A++   +  EA+ A+ +    EV GR + +++  +  +   Q+       +T   L V+NLS+      L+E F       +S  + ++N+GR  GY FV F T E+A+ A++S +  E+ GR +RL+F
Sbjct:  362 KENKKERDARTLFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKT---LIVNNLSYAASEETLQELFKK----ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEF 532          

HSP 2 Score: 78.1814 bits (191), Expect = 7.410e-14
Identity = 52/194 (26.80%), Postives = 100/194 (51.55%), Query Frame = 3
Query:  117 DTTVQTKPEQTQKQNIRRK---IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 689
            D T +   +++QK    R+   + V NL ++ S   ++ LF        +++ ++  G+ + +AFV   + E+A+ A+N  +  E+ GR IR+EF+      +   +A     +    L+V  LS       LRE F  +   +S+++V + + G S G+GFV F++ E+A+AA  +++  E+ G  + L F +
Sbjct:  441 DYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSP-SWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 627          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 9.352e-17
Identity = 52/182 (28.57%), Postives = 91/182 (50.00%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 698
            +Y+ NL    +  E  +LF   G +  + ++K +  K R F FV  A+ E AQ AV++ + +E  G+ + V  A+K        +K   Q       +     L++ NL  +V    L+  FSA F  ++S  +    +G+S G+GFV + T EEA  A++ ++ + L G+PL +   Q+ +
Sbjct:  263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSA-FGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKE 443          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.221e-16
Identity = 58/201 (28.86%), Postives = 98/201 (48.76%), Query Frame = 3
Query:  129 QTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEV-SGRIIRVEFAKKFKKPRPQRSASAPARETQHK---------LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 701
            + + E  +K  +   +YV N    F   ++K  F P G +   +++  + GK++ F FV   + E A+AAV   + +++  G+ + V  A+  KK   Q+       E + K         LYV NL   +    LR  FS   N  S+KV+ +  EGRS G+GFV F    EA  A++ L+G+ +  +PL +   Q+ ++
Sbjct:  170 EREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYV--ARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTD-EEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEE 367          

HSP 2 Score: 70.4774 bits (171), Expect = 1.545e-11
Identity = 42/185 (22.70%), Postives = 92/185 (49.73%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL-MGRPLRLKFGQKNDDVSESNRKR 725
            +++ NL  +     I + F+  G ++  ++   + G ++ + FV   + E A  ++++ +   ++G+ +   +  KF   + +        +    +YV N +       L+EFF   +  ++S  V    +G+S G+GFV+F T E AEAA+ +L+GK++  G+ L +   QK  +  +  +++
Sbjct:   92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV---YVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEP-YGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRK 272          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.221e-16
Identity = 54/183 (29.51%), Postives = 94/183 (51.37%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 701
            +Y+ N         ++ +F+  G  + V+++    G++R F FV   + EEAQ AV++ + +EV+GR+I       R+E   + K+   Q       R     LYV NL   +    LR+ FS      S+KV+ E   G S G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.595e-16
Identity = 55/183 (30.05%), Postives = 90/183 (49.18%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 701
            +YV NLP   +  E+K  F   G +    ++K + G +R+F FV   SPE A  AV + +   +   ++ V  A+K        ++   Q   S   +     LY+ NL   V    L+E FS   N  S KV+  S +G S G+GFV+++  EEA  A+  ++GK +  +PL +   Q+ ++
Sbjct:  227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEE 408          
The following BLAST results are available for this feature:
BLAST of EY661766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PABP1_PONAB5.483e-1729.51Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP1_HUMAN5.483e-1729.51Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN5.483e-1729.51Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
PABP1_RAT7.161e-1729.51Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE7.161e-1729.51Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
NUCL_CHICK7.161e-1728.18Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1[more]
PABP_SCHPO9.352e-1728.57Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DROME1.221e-1628.86Polyadenylate-binding protein OS=Drosophila melano... [more]
EPAB_XENTR1.221e-1629.51Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABP5_ARATH1.595e-1630.05Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-036-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661766 ID=EY661766; Name=EY661766; organism=Citrus sinensis; type=EST; length=921bp
TTCGTCGACCCACGCGTCCGTGTATAAAGCTTCCCCATTCTTCCAATTCT
ACTCCTTCACTTATCTATAATTTTCCAACACGAAATGTTTGCCTTCAAGT
ATGCTCAACTTTGCAAGACACAACAGTACAAACAAAACCAGAACAAACAC
AGAAACAGAATATAAGGAGAAAGATATATGTGTTTAATTTGCCTTGGTCT
TTCTCTGTTGCAGAAATCAAGAATCTCTTTGCCCCATGTGGAACTGTTGT
AGATGTTGAGATTATAAAGCACAAAGGTGGGAAAAACAGAAACTTTGCAT
TTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGCTGCCGTTAATCAATTC
GACACTCAGGAAGTCTCTGGGAGGATTATAAGGGTTGAGTTTGCAAAGAA
ATTCAAGAAACCACGACCTCAACGTTCTGCAAGTGCCCCTGCTAGAGAAA
CACAACATAAGCTTTATGTGTCGAATCTTTCTTGGAAAGTTAGATCTACT
CATCTCAGAGAATTTTTTTCAGCTAATTTTAATCCTGTTTCCTCCAAGGT
TGTTTTTGAGAGCAATGAAGGAAGATCCGCTGGGTATGGCTTTGTCTCAT
TTGCCACAAAGGAAGAAGCAGAAGCAGCAATTTCTTCTTTGGATGGCAAG
GAGTTGATGGGGCGACCACTTCGTTTGAAATTCGGTCAAAAGAATGATGA
TGTATCAGAGAGTAACAGGAAGAGGAGGATGTATCTGAGGATCAATCTGC
AGAGTCATAGCTATTCCAATTTTTGGTGGNTTGCAGATTACAGCGCCATC
AAATCAGACACGCATTGCAGTATCGGTGAGCCAGCAGCAGCAGCGACAGT
GTCGAGTGCAACATATGCGTCGGGCCGTCCCATTGCAGGATGGCTGGGCT
GGCCCGGTGCTCGGGCAACAA
back to top