EY661766

Overview
NameEY661766
Unique NameEY661766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.344e-14
Identity = 58/201 (28.86%), Postives = 90/201 (44.78%), Query Frame = 3
Query:  126 VQTKPEQTQKQNIRRK---IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 698
            V  K  Q++ + ++ K   +YV N+    S  E + LF   G +    + K   GK R F FV       A  AV++ +  E  G+ + V  A+K        KK          A+     L+V NL   +    L+E F A F  ++S  V     G S G+GFV F+T EEA  AI+  + + + G+PL +   Q+ +
Sbjct:  202 VSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEF-APFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKE 401          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 78.5666 bits (192), Expect = 5.674e-14
Identity = 55/182 (30.22%), Postives = 85/182 (46.70%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 698
            +YV N+    +  + + LFA  G +V   + K   GK + F FV     E+A  AV   +  E++G  + V  A+K        KK          A+     L+V NL   V    L E F A +  ++S  V  +  G+S G+GFV F+T EEA  AI+  + + + G+PL +   Q+ D
Sbjct:  221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEF-APYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKD 401          

HSP 2 Score: 68.9366 bits (167), Expect = 4.496e-11
Identity = 50/190 (26.32%), Postives = 95/190 (50.00%), Query Frame = 3
Query:  111 LQDTTVQ--TKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 671
            +QD   Q  T  E    +N    +YV +L  S S A + ++F+P G+V  + + +    K +  +A+V     E  + A+ Q +   + GR+ R+ ++++    R + S +         +++ NL   + +  L + FS   + +SSK+  + N G+S G+GFV F  +  A+ AI +L+G  L G+ +
Sbjct:   17 IQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGN---------IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI 196          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.410e-14
Identity = 58/210 (27.62%), Postives = 101/210 (48.10%), Query Frame = 3
Query:  135 KPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA-KKFKKPRPQRSASAPARETQH------KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRKRRMYLRI 743
            K ++ + +     +Y+ NL    S   ++  FA  G +V + I K +    R +AFV   +PE+A+ A    +  +   + + V  A KK ++ +  R       E Q        +YV N++  V    LR+ FS      S+K++ +  +G+S G+GFV F+T EEA  A+ +  G+   G+PL +   QK +D       R+M L++
Sbjct:  190 KTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKED-------RKMQLQV 391          

HSP 2 Score: 70.0922 bits (170), Expect = 2.018e-11
Identity = 50/185 (27.03%), Postives = 89/185 (48.11%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRKR 725
            ++V NLP S + A ++++F   G +V  ++   + GK+R + FV     + A AA+   ++  V+ + I V +F KK  + +P+        E    LY+ NL   V    LRE F A F  + S  + +       GY FV+F   E+A  A  +++G +   + L +   QK  +  +  R++
Sbjct:  114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPE--------EKYTNLYMKNLDADVSEDLLREKF-AEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQ 289          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.410e-14
Identity = 47/181 (25.97%), Postives = 95/181 (52.49%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-------KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 695
            +Y+ N         +K++F+  G  + V+++    GK++ F FV+  S E A+ AV + + ++++G++I V  A+K  + + +        + +        KLY+ NL   +    LR  FS +F  + S+V     EG+S G+G + F++ E+A  A++ ++G+ L  +PL +   Q++
Sbjct:  192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFS-SFGSI-SRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQRH 370          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.264e-13
Identity = 49/183 (26.78%), Postives = 89/183 (48.63%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRK 722
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V +    KK R  +     A  T   +YV N+S +      R+ F A +  V+S  +   +EG+S G+GFV+F T E A  A+  L+GKE  G+ L +   QK  +  E  RK
Sbjct:  155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIP-KKDRQSKFEEMKANFTN--IYVKNISLEATDEEFRDLF-AKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRK 333          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.264e-13
Identity = 55/208 (26.44%), Postives = 103/208 (49.52%), Query Frame = 3
Query:   69 NFPTRNVCLQVCSTLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 683
            N PT N      +T+ + +  +  E +  ++ +  + V  LP + +  E+K+LF   G +   ++++ K  G++  + FV    P++A+ A+N  +   +  + I+V +A         R +SA  R+    LYVS L   +    L + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++  G   P+ +KF
Sbjct:   36 NGPTCNNTANCPNTINNCS--SPVESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 230          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.156e-13
Identity = 52/182 (28.57%), Postives = 85/182 (46.70%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 698
            IYV N+    +  E + LF+  G +V   + K   GK + F FV       A  AV + + +E   + + V       E A++ KK   Q      A+     L++ NL   +    L+E F A +  ++S  V    EG S G+GFV F++ EEA  A++  + + + G+PL +   Q+ D
Sbjct:  233 IYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEF-APYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKD 413          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.816e-13
Identity = 51/183 (27.87%), Postives = 88/183 (48.09%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRK 722
            I++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V      KK R  +     A  T   +YV N++ +V     RE F A F  V+S  +    EG+S G+GFV+F T E A  A+  L+GK+  G+ L +   QK  +  E  RK
Sbjct:  150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIP-KKDRQSKFEEMKANFTN--VYVKNINNEVTDEEFRELF-AKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRK 328          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.816e-13
Identity = 48/183 (26.23%), Postives = 90/183 (49.18%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 689
            ++V N+       ++K LF   G    V++I+   GK++ F FV   + E AQ AV     + + G+++ V           E  ++F++ R +  +  P       +Y+ NL   +    L+E FS+  +   +KV+ E  +G+  G+G V F++ EEA  A+  ++G+ +  +PL +  GQ
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP----IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.816e-13
Identity = 61/237 (25.74%), Postives = 106/237 (44.73%), Query Frame = 3
Query:   33 PHSSNSTPSLIYNFPTRNVCLQVCSTLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKFGQKNDDVSESNRKRRMY 734
            P  SN   S   N P+ N   + C +   T   T   +T        + V  LP + +  E ++LF   G +   ++++ K  G++  + FV    P++A+ A+N  +   +  + I+V +A         R +SA  R+    LYVS L   +    L + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++  G   P+ +KF       S      ++Y
Sbjct:    3 PQVSNGPTSNTSNGPSSNN--RNCPSPMQTGAATDDSKTN-------LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLY 219          
The following BLAST results are available for this feature:
BLAST of EY661766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PABP_ASHGO4.344e-1428.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_YEAST5.674e-1430.22Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPX_ARATH7.410e-1427.62Probable polyadenylate-binding protein At2g36660 O... [more]
PAB4L_HUMAN7.410e-1425.97Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
PABP_CHAGB1.264e-1326.78Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV2_XENTR1.264e-1326.44ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
PABP_KLULA2.156e-1328.57Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEUCR2.816e-1327.87Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP5_MACMU2.816e-1326.23Polyadenylate-binding protein 5 OS=Macaca mulatta ... [more]
ELAV4_RAT2.816e-1325.74ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-036-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661766 ID=EY661766; Name=EY661766; organism=Citrus sinensis; type=EST; length=921bp
TTCGTCGACCCACGCGTCCGTGTATAAAGCTTCCCCATTCTTCCAATTCT
ACTCCTTCACTTATCTATAATTTTCCAACACGAAATGTTTGCCTTCAAGT
ATGCTCAACTTTGCAAGACACAACAGTACAAACAAAACCAGAACAAACAC
AGAAACAGAATATAAGGAGAAAGATATATGTGTTTAATTTGCCTTGGTCT
TTCTCTGTTGCAGAAATCAAGAATCTCTTTGCCCCATGTGGAACTGTTGT
AGATGTTGAGATTATAAAGCACAAAGGTGGGAAAAACAGAAACTTTGCAT
TTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGCTGCCGTTAATCAATTC
GACACTCAGGAAGTCTCTGGGAGGATTATAAGGGTTGAGTTTGCAAAGAA
ATTCAAGAAACCACGACCTCAACGTTCTGCAAGTGCCCCTGCTAGAGAAA
CACAACATAAGCTTTATGTGTCGAATCTTTCTTGGAAAGTTAGATCTACT
CATCTCAGAGAATTTTTTTCAGCTAATTTTAATCCTGTTTCCTCCAAGGT
TGTTTTTGAGAGCAATGAAGGAAGATCCGCTGGGTATGGCTTTGTCTCAT
TTGCCACAAAGGAAGAAGCAGAAGCAGCAATTTCTTCTTTGGATGGCAAG
GAGTTGATGGGGCGACCACTTCGTTTGAAATTCGGTCAAAAGAATGATGA
TGTATCAGAGAGTAACAGGAAGAGGAGGATGTATCTGAGGATCAATCTGC
AGAGTCATAGCTATTCCAATTTTTGGTGGNTTGCAGATTACAGCGCCATC
AAATCAGACACGCATTGCAGTATCGGTGAGCCAGCAGCAGCAGCGACAGT
GTCGAGTGCAACATATGCGTCGGGCCGTCCCATTGCAGGATGGCTGGGCT
GGCCCGGTGCTCGGGCAACAA
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