EY661766

Overview
NameEY661766
Unique NameEY661766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.816e-13
Identity = 61/237 (25.74%), Postives = 106/237 (44.73%), Query Frame = 3
Query:   33 PHSSNSTPSLIYNFPTRNVCLQVCSTLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKFGQKNDDVSESNRKRRMY 734
            P  SN   S   N P+ N   + C +   T   T   +T        + V  LP + +  E ++LF   G +   ++++ K  G++  + FV    P++A+ A+N  +   +  + I+V +A         R +SA  R+    LYVS L   +    L + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++  G   P+ +KF       S      ++Y
Sbjct:   15 PQVSNGPTSNTSNGPSSNN--RNCPSPMQTGAATDDSKTN-------LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLY 231          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.816e-13
Identity = 61/237 (25.74%), Postives = 106/237 (44.73%), Query Frame = 3
Query:   33 PHSSNSTPSLIYNFPTRNVCLQVCSTLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKFGQKNDDVSESNRKRRMY 734
            P  SN   S   N P+ N   + C +   T   T   +T        + V  LP + +  E ++LF   G +   ++++ K  G++  + FV    P++A+ A+N  +   +  + I+V +A         R +SA  R+    LYVS L   +    L + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++  G   P+ +KF       S      ++Y
Sbjct:   10 PQVSNGPTSNTSNGPSSNN--RNCPSPMQTGATTDDSKTN-------LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLY 226          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.678e-13
Identity = 48/183 (26.23%), Postives = 90/183 (49.18%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 689
            ++V N+       ++K LF   G    V++I+   GK++ F FV   + E AQ AV     + + G+++ V           E  ++F++ R +  +  P       +Y+ NL   +    L+E FS+  +   +KV+ E  +G+  G+G V F++ EEA  A+  ++G+ +  +PL +  GQ
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP----IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.678e-13
Identity = 48/183 (26.23%), Postives = 90/183 (49.18%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 689
            ++V N+       ++K LF   G    V++I+   GK++ F FV   + E AQ AV     + + G+++ V           E  ++F++ R +  +  P       +Y+ NL   +    L+E FS+  +   +KV+ E  +G+  G+G V F++ EEA  A+  ++G+ +  +PL +  GQ
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP----IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.678e-13
Identity = 48/183 (26.23%), Postives = 90/183 (49.18%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 689
            ++V N+       ++K LF   G    V++I+   GK++ F FV   + E AQ AV     + + G+++ V           E  ++F++ R +  +  P       +Y+ NL   +    L+E FS+  +   +KV+ E  +G+  G+G V F++ EEA  A+  ++G+ +  +PL +  GQ
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP----IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.678e-13
Identity = 48/183 (26.23%), Postives = 90/183 (49.18%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 689
            ++V N+       ++K LF   G    V++I+   GK++ F FV   + E AQ AV     + + G+++ V           E  ++F++ R +  +  P       +Y+ NL   +    L+E FS+  +   +KV+ E  +G+  G+G V F++ EEA  A+  ++G+ +  +PL +  GQ
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP----IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.678e-13
Identity = 48/183 (26.23%), Postives = 90/183 (49.18%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 689
            ++V N+       ++K LF   G    V++I+   GK++ F FV   + E AQ AV     + + G+++ V           E  ++F++ R +  +  P       +Y+ NL   +    L+E FS+  +   +KV+ E  +G+  G+G V F++ EEA  A+  ++G+ +  +PL +  GQ
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP----IYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: RBM19_HUMAN (Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.803e-13
Identity = 54/192 (28.12%), Postives = 91/192 (47.40%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK----NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRP--QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFE--SNEGRSAGYGFVSFATKEEAEAAISSL-DGKELMGRPLRLKFGQKNDDVSESNRK 722
            +++ NL +  +  ++K +F+  GTV    I K K       +  F FV    PE+AQ A+ Q     V G  + V  +++  KP     R    P ++T  K+ V N+ ++  S  +RE FS  F  + +  + +  +  G   G+GFV F TK++A+ A ++L     L GR L L++      +    RK
Sbjct:  732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFS-TFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEVTLQALRRK 922          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.803e-13
Identity = 50/185 (27.03%), Postives = 92/185 (49.73%), Query Frame = 3
Query:  141 EQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK--GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 683
            E    ++ +  + V  LP + +  E+K+LF   G +   ++++ K   G++  + FV    P++A+ A+N  +   +  + I+V +A         R +SA  R+    LYVS L   +    L + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++  G   P+ +KF
Sbjct:   57 ESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 230          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: RBM19_MOUSE (Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.273e-13
Identity = 54/192 (28.12%), Postives = 89/192 (46.35%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK----NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKP--RPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSA--GYGFVSFATKEEAEAAISSL-DGKELMGRPLRLKFGQKNDDVSESNRK 722
            +++ NL +S +   +K +F+  G +    I K K       +  F FV    PE+AQ A+ Q     V G  + V  +++  KP     R    P ++T  K+ V N+ ++     +RE FS  F  + +  + +   G  A  G+GFV F TK++A+ A ++L     L GR L L++      V    RK
Sbjct:  724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFS-TFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQTLRRK 914          
The following BLAST results are available for this feature:
BLAST of EY661766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
ELAV4_MOUSE2.816e-1325.74ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]
ELAV4_HUMAN2.816e-1325.74ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
PABP5_PONPY3.678e-1326.23Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]
PABP5_PANTR3.678e-1326.23Polyadenylate-binding protein 5 OS=Pan troglodytes... [more]
PABP5_HYLLA3.678e-1326.23Polyadenylate-binding protein 5 OS=Hylobates lar G... [more]
PABP5_HUMAN3.678e-1326.23Polyadenylate-binding protein 5 OS=Homo sapiens GN... [more]
PABP5_GORGO3.678e-1326.23Polyadenylate-binding protein 5 OS=Gorilla gorilla... [more]
RBM19_HUMAN4.803e-1328.13Probable RNA-binding protein 19 OS=Homo sapiens GN... [more]
ELAV2_XENLA4.803e-1327.03ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
RBM19_MOUSE6.273e-1328.13Probable RNA-binding protein 19 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-036-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661766 ID=EY661766; Name=EY661766; organism=Citrus sinensis; type=EST; length=921bp
TTCGTCGACCCACGCGTCCGTGTATAAAGCTTCCCCATTCTTCCAATTCT
ACTCCTTCACTTATCTATAATTTTCCAACACGAAATGTTTGCCTTCAAGT
ATGCTCAACTTTGCAAGACACAACAGTACAAACAAAACCAGAACAAACAC
AGAAACAGAATATAAGGAGAAAGATATATGTGTTTAATTTGCCTTGGTCT
TTCTCTGTTGCAGAAATCAAGAATCTCTTTGCCCCATGTGGAACTGTTGT
AGATGTTGAGATTATAAAGCACAAAGGTGGGAAAAACAGAAACTTTGCAT
TTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGCTGCCGTTAATCAATTC
GACACTCAGGAAGTCTCTGGGAGGATTATAAGGGTTGAGTTTGCAAAGAA
ATTCAAGAAACCACGACCTCAACGTTCTGCAAGTGCCCCTGCTAGAGAAA
CACAACATAAGCTTTATGTGTCGAATCTTTCTTGGAAAGTTAGATCTACT
CATCTCAGAGAATTTTTTTCAGCTAATTTTAATCCTGTTTCCTCCAAGGT
TGTTTTTGAGAGCAATGAAGGAAGATCCGCTGGGTATGGCTTTGTCTCAT
TTGCCACAAAGGAAGAAGCAGAAGCAGCAATTTCTTCTTTGGATGGCAAG
GAGTTGATGGGGCGACCACTTCGTTTGAAATTCGGTCAAAAGAATGATGA
TGTATCAGAGAGTAACAGGAAGAGGAGGATGTATCTGAGGATCAATCTGC
AGAGTCATAGCTATTCCAATTTTTGGTGGNTTGCAGATTACAGCGCCATC
AAATCAGACACGCATTGCAGTATCGGTGAGCCAGCAGCAGCAGCGACAGT
GTCGAGTGCAACATATGCGTCGGGCCGTCCCATTGCAGGATGGCTGGGCT
GGCCCGGTGCTCGGGCAACAA
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