EY661766

Overview
NameEY661766
Unique NameEY661766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.193e-13
Identity = 55/207 (26.57%), Postives = 92/207 (44.44%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRKRRMYLRINLQSHSYSNF 773
            +Y+ N+    +  E + L A  G    V + +   G+N+ F FV   + E+A   V + +  E  G+ + V  A+K        KK          A+     L++ NL   +    L E F A +  ++S  V  +  G+S G+GFV F+T EEA  AI+  + + + G+PL +   Q+ D        RR  L   +Q+ +   F
Sbjct:  218 VYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEF-APYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKD-------VRRSQLAQQIQARNQMRF 416          

HSP 2 Score: 70.0922 bits (170), Expect = 2.018e-11
Identity = 48/192 (25.00%), Postives = 97/192 (50.52%), Query Frame = 3
Query:  111 LQDTTVQTKPEQTQKQN----IRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNR-NFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 671
            L++ ++Q K E T ++N    +   +YV +L  S S A + ++F+P G V  + + +    K    +A+V     + A+ A+ + +   + G++ R+ ++++    R + + +         +++ NL   + +  L + FS   N +SSKV  +   G+S G+G+V F   E A  AI +L+G  L G+ +
Sbjct:   12 LENLSLQDKQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGN---------IFIKNLHPDIDNKALYDTFSVFGNILSSKVATDET-GKSKGFGYVHFEEDESASEAIDALNGMLLNGQEI 193          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.070e-12
Identity = 47/194 (24.23%), Postives = 93/194 (47.94%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRKRRMYLRINLQS 755
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V      KK R  +     A  T   +Y+ N+  +V     R+ F   F  ++S  +    EG+S G+GFV+F+T + A+AA+  ++ KE+ G+ L +   QK  +  E  RK+    R+   S
Sbjct:  142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS-KKDRQSKFEEMKANFTN--VYIKNIDQEVTDEEFRKMFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKAS 331          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.070e-12
Identity = 47/194 (24.23%), Postives = 93/194 (47.94%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRKRRMYLRINLQS 755
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V      KK R  +     A  T   +Y+ N+  +V     R+ F   F  ++S  +    EG+S G+GFV+F+T + A+AA+  ++ KE+ G+ L +   QK  +  E  RK+    R+   S
Sbjct:  142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS-KKDRQSKFEEMKANFTN--VYIKNIDQEVTDEEFRKMFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKAS 331          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.070e-12
Identity = 48/196 (24.49%), Postives = 92/196 (46.94%), Query Frame = 3
Query:  114 QDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKP-----RPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 683
            +D     K ++ ++      I+V  L WS     +K  F   G V+   +I  +G  ++R + +V   +   A+ A+ +   +E+ GR I  + +    KP     R ++    P+ E    L++ NLS+      + E F+ +   VS ++       +  G+G+V F+  E+A+ A+ +L G+ +  RP+RL F
Sbjct:  150 EDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTS--KPAGNNDRAKKFGDTPS-EPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDF 342          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.070e-12
Identity = 48/176 (27.27%), Postives = 89/176 (50.57%), Query Frame = 3
Query:  165 RRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 683
            +  + V  LP + +  E K+LF   G +   ++++ K  G++  + FV    P +A  A+N  +  ++  + I+V +A         R +SA  R+    LYVS+L   +    + + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++ +G   P+ +KF
Sbjct:   33 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKF 197          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.070e-12
Identity = 48/176 (27.27%), Postives = 89/176 (50.57%), Query Frame = 3
Query:  165 RRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 683
            +  + V  LP + +  E K+LF   G +   ++++ K  G++  + FV  + P +A  A+N  +  ++  + I+V +A         R +SA  R+    LYVS L   +    + + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++ +G   P+ +KF
Sbjct:   38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 202          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.070e-12
Identity = 49/179 (27.37%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  156 QNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 683
            ++ +  + V  LP + +  E+K+LF   G +   ++++ K  G++  + FV    P++A+ A+N  +   +  + I+V +A         R +SA  R+    LYVS L   +    L + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++  G   P+ +KF
Sbjct:   35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 202          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.070e-12
Identity = 49/179 (27.37%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  156 QNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 683
            ++ +  + V  LP + +  E+K+LF   G +   ++++ K  G++  + FV    P++A+ A+N  +   +  + I+V +A         R +SA  R+    LYVS L   +    L + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++  G   P+ +KF
Sbjct:   35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 202          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.070e-12
Identity = 49/179 (27.37%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  156 QNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 683
            ++ +  + V  LP + +  E+K+LF   G +   ++++ K  G++  + FV    P++A+ A+N  +   +  + I+V +A         R +SA  R+    LYVS L   +    L + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++  G   P+ +KF
Sbjct:   35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 202          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.825e-12
Identity = 46/194 (23.71%), Postives = 93/194 (47.94%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRKRRMYLRINLQS 755
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V      KK R  +     A  T   +Y+ NL  ++     R+ F   F  ++S  +    EG+S G+GFV+++T + A+AA+  ++ KE+ G+ L +   QK  +  E  RK+    R+   S
Sbjct:  138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS-KKDRQSKFEEMKANFTN--VYIKNLDQEISEEEFRQMFE-KFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKAS 327          
The following BLAST results are available for this feature:
BLAST of EY661766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PABP_CANGA8.193e-1326.57Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEOFI1.070e-1224.23Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPFU1.070e-1224.23Polyadenylate-binding protein, cytoplasmic and nuc... [more]
NSR1_YEAST1.070e-1224.49Nuclear localization sequence-binding protein OS=S... [more]
ELAV3_XENLA1.070e-1227.27ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE... [more]
ELAV3_MOUSE1.070e-1227.27ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
ELAV2_PONAB1.070e-1227.37ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE1.070e-1227.37ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN1.070e-1227.37ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
PABP_ASPTN1.825e-1223.71Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-036-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661766 ID=EY661766; Name=EY661766; organism=Citrus sinensis; type=EST; length=921bp
TTCGTCGACCCACGCGTCCGTGTATAAAGCTTCCCCATTCTTCCAATTCT
ACTCCTTCACTTATCTATAATTTTCCAACACGAAATGTTTGCCTTCAAGT
ATGCTCAACTTTGCAAGACACAACAGTACAAACAAAACCAGAACAAACAC
AGAAACAGAATATAAGGAGAAAGATATATGTGTTTAATTTGCCTTGGTCT
TTCTCTGTTGCAGAAATCAAGAATCTCTTTGCCCCATGTGGAACTGTTGT
AGATGTTGAGATTATAAAGCACAAAGGTGGGAAAAACAGAAACTTTGCAT
TTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGCTGCCGTTAATCAATTC
GACACTCAGGAAGTCTCTGGGAGGATTATAAGGGTTGAGTTTGCAAAGAA
ATTCAAGAAACCACGACCTCAACGTTCTGCAAGTGCCCCTGCTAGAGAAA
CACAACATAAGCTTTATGTGTCGAATCTTTCTTGGAAAGTTAGATCTACT
CATCTCAGAGAATTTTTTTCAGCTAATTTTAATCCTGTTTCCTCCAAGGT
TGTTTTTGAGAGCAATGAAGGAAGATCCGCTGGGTATGGCTTTGTCTCAT
TTGCCACAAAGGAAGAAGCAGAAGCAGCAATTTCTTCTTTGGATGGCAAG
GAGTTGATGGGGCGACCACTTCGTTTGAAATTCGGTCAAAAGAATGATGA
TGTATCAGAGAGTAACAGGAAGAGGAGGATGTATCTGAGGATCAATCTGC
AGAGTCATAGCTATTCCAATTTTTGGTGGNTTGCAGATTACAGCGCCATC
AAATCAGACACGCATTGCAGTATCGGTGAGCCAGCAGCAGCAGCGACAGT
GTCGAGTGCAACATATGCGTCGGGCCGTCCCATTGCAGGATGGCTGGGCT
GGCCCGGTGCTCGGGCAACAA
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