EY661766

Overview
NameEY661766
Unique NameEY661766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.825e-12
Identity = 48/176 (27.27%), Postives = 89/176 (50.57%), Query Frame = 3
Query:  165 RRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 683
            +  + V  LP + +  E K+LF   G +   ++++ K  G++  + FV  + P +A  A+N  +  ++  + I+V +A         R +SA  R+    LYVS L   +    + + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++ +G   P+ +KF
Sbjct:   38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 202          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.825e-12
Identity = 48/168 (28.57%), Postives = 86/168 (51.19%), Query Frame = 3
Query:  189 LPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 683
            LP + +  E+K+LF   G +   ++++ K  G++  + FV    P++A+ A+N  +   +  + I+V +A         R +SA  R+    LYVS L   +    L + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++  G   P+ +KF
Sbjct:   46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 202          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.384e-12
Identity = 47/174 (27.01%), Postives = 95/174 (54.60%), Query Frame = 3
Query:  168 RKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 689
            + + + NL +S +   ++ +F        +++ +++ GK++ +AF+  AS E+A+ A+N  + +E+ GR IR+E     + PR   +A +   +T   L+V  LS       L+E F  +   V +++V +   G S G+GFV F ++E+A+AA  +++  E+ G  + L + +
Sbjct:  488 KTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE----LQGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 648          

HSP 2 Score: 70.4774 bits (171), Expect = 1.545e-11
Identity = 50/205 (24.39%), Postives = 99/205 (48.29%), Query Frame = 3
Query:  135 KPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFF-SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKNDDVSESNRKRRMYLR 740
            K + ++K+   R +   NLP+  +  E+K +F     +  V     K GK++  A++   +  +A+    +    E+ GR I + +  +  + +  R         + K L +SNLS+      L+E F  A F  V      ++  G+S GY F+ FA+ E+A+ A++S + +E+ GR +RL+  G +    + S   + ++++
Sbjct:  384 KGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVP-----QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVK 579          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.384e-12
Identity = 47/174 (27.01%), Postives = 95/174 (54.60%), Query Frame = 3
Query:  168 RKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 689
            + + + NL +S +   ++ +F        +++ +++ GK++ +AF+  AS E+A+ A+N  + +E+ GR IR+E     + PR   +A +   +T   L+V  LS       L+E F  +   V +++V +   G S G+GFV F ++E+A+AA  +++  E+ G  + L + +
Sbjct:  487 KTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE----LQGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 647          

HSP 2 Score: 70.4774 bits (171), Expect = 1.545e-11
Identity = 50/205 (24.39%), Postives = 99/205 (48.29%), Query Frame = 3
Query:  135 KPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFF-SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKNDDVSESNRKRRMYLR 740
            K + ++K+   R +   NLP+  +  E+K +F     +  V     K GK++  A++   +  +A+    +    E+ GR I + +  +  + +  R         + K L +SNLS+      L+E F  A F  V      ++  G+S GY F+ FA+ E+A+ A++S + +E+ GR +RL+  G +    + S   + ++++
Sbjct:  383 KGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVP-----QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVK 578          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.384e-12
Identity = 47/174 (27.01%), Postives = 95/174 (54.60%), Query Frame = 3
Query:  168 RKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 689
            + + + NL +S +   ++ +F        +++ +++ GK++ +AF+  AS E+A+ A+N  + +E+ GR IR+E     + PR   +A +   +T   L+V  LS       L+E F  +   V +++V +   G S G+GFV F ++E+A+AA  +++  E+ G  + L + +
Sbjct:  486 KTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE----LQGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646          

HSP 2 Score: 70.4774 bits (171), Expect = 1.545e-11
Identity = 50/205 (24.39%), Postives = 99/205 (48.29%), Query Frame = 3
Query:  135 KPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFF-SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKNDDVSESNRKRRMYLR 740
            K + ++K+   R +   NLP+  +  E+K +F     +  V     K GK++  A++   +  +A+    +    E+ GR I + +  +  + +  R         + K L +SNLS+      L+E F  A F  V      ++  G+S GY F+ FA+ E+A+ A++S + +E+ GR +RL+  G +    + S   + ++++
Sbjct:  382 KGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVP-----QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVK 577          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.113e-12
Identity = 48/194 (24.74%), Postives = 91/194 (46.91%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRKRRMYLRINLQS 755
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V      KK R  +     A  T   +Y+ N+   V     RE F   F  ++S  +    EG+S G+GFV+F+T E A+AA+  ++ KE+  + L +   QK  +  E  RK+    R+   S
Sbjct:  139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS-KKDRQSKFEEMKANFTN--VYIKNIDQDVTEEEFRELFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKAS 328          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.113e-12
Identity = 47/194 (24.23%), Postives = 92/194 (47.42%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRKRRMYLRINLQS 755
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V      KK R  +     A  T   +Y+ NL  ++     R+ F   F  ++S  +    EG+S G+GFV+F+T E A+AA+  ++ KE+  + L +   QK  +  E  RK+    R+   S
Sbjct:  144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS-KKDRQSKFEEMKANFTN--VYIKNLDSEIDDDEFRKMFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKAS 333          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.311e-12
Identity = 45/184 (24.46%), Postives = 90/184 (48.91%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRKR 725
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V      KK R  +     A  T   +Y+ N+  +V     R+ F   F  ++S  +   +EG+S G+GFV+F+T E A+AA+  ++ KE+  + L +   QK  +  E  RK+
Sbjct:  132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS-KKDRQSKFEEMKANFTN--IYIKNIDPEVEDEEFRKLFE-KFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQ 311          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.311e-12
Identity = 49/191 (25.65%), Postives = 90/191 (47.12%), Query Frame = 3
Query:  132 TKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK-KFKKPRPQRSASA-----PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 683
            TKP Q   +     ++V  L W+     +   F   GT+V   +I   + G+++ + +V   +PE A+AAV    T+E+ GR++ ++ +  +   P+P     A        E    ++V NLS+      L   F    +  S ++  +   GR  G+G+V+F+  + A+  +  ++G  + GRP RL F
Sbjct:  253 TKPSQDSNETCT--VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRPCRLDF 440          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: NUCL_RAT (Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 9.058e-12
Identity = 47/174 (27.01%), Postives = 93/174 (53.45%), Query Frame = 3
Query:  168 RKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 689
            + + + NL +S +   ++ +F        +++ ++  GK++ +AF+  AS E+A+ A+N  +  E+ GR IR+E     + PR   +A +   +T   L+V  LS       L+E F  +   V +++V +   G S G+GFV F ++E+A+AA  +++  E+ G  + L + +
Sbjct:  489 KTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE----LQGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 649          
The following BLAST results are available for this feature:
BLAST of EY661766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
ELAV3_HUMAN1.825e-1227.27ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
ELAV2_RAT1.825e-1228.57ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
NUCL_PONAB2.384e-1227.01Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3[more]
NUCL_MACFA2.384e-1227.01Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3[more]
NUCL_HUMAN2.384e-1227.01Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3[more]
PABP_ASPOR3.113e-1224.74Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPNC3.113e-1224.23Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_EMENI5.311e-1224.46Polyadenylate-binding protein, cytoplasmic and nuc... [more]
GAR2_SCHPO5.311e-1225.65Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]
NUCL_RAT9.058e-1227.01Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-036-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661766 ID=EY661766; Name=EY661766; organism=Citrus sinensis; type=EST; length=921bp
TTCGTCGACCCACGCGTCCGTGTATAAAGCTTCCCCATTCTTCCAATTCT
ACTCCTTCACTTATCTATAATTTTCCAACACGAAATGTTTGCCTTCAAGT
ATGCTCAACTTTGCAAGACACAACAGTACAAACAAAACCAGAACAAACAC
AGAAACAGAATATAAGGAGAAAGATATATGTGTTTAATTTGCCTTGGTCT
TTCTCTGTTGCAGAAATCAAGAATCTCTTTGCCCCATGTGGAACTGTTGT
AGATGTTGAGATTATAAAGCACAAAGGTGGGAAAAACAGAAACTTTGCAT
TTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGCTGCCGTTAATCAATTC
GACACTCAGGAAGTCTCTGGGAGGATTATAAGGGTTGAGTTTGCAAAGAA
ATTCAAGAAACCACGACCTCAACGTTCTGCAAGTGCCCCTGCTAGAGAAA
CACAACATAAGCTTTATGTGTCGAATCTTTCTTGGAAAGTTAGATCTACT
CATCTCAGAGAATTTTTTTCAGCTAATTTTAATCCTGTTTCCTCCAAGGT
TGTTTTTGAGAGCAATGAAGGAAGATCCGCTGGGTATGGCTTTGTCTCAT
TTGCCACAAAGGAAGAAGCAGAAGCAGCAATTTCTTCTTTGGATGGCAAG
GAGTTGATGGGGCGACCACTTCGTTTGAAATTCGGTCAAAAGAATGATGA
TGTATCAGAGAGTAACAGGAAGAGGAGGATGTATCTGAGGATCAATCTGC
AGAGTCATAGCTATTCCAATTTTTGGTGGNTTGCAGATTACAGCGCCATC
AAATCAGACACGCATTGCAGTATCGGTGAGCCAGCAGCAGCAGCGACAGT
GTCGAGTGCAACATATGCGTCGGGCCGTCCCATTGCAGGATGGCTGGGCT
GGCCCGGTGCTCGGGCAACAA
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