EY661766

Overview
NameEY661766
Unique NameEY661766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.545e-11
Identity = 48/177 (27.12%), Postives = 89/177 (50.28%), Query Frame = 3
Query:  165 RRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR-SAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 683
            +  + V  LP + +  E K+LF   G +   ++++ K  G++  + FV    P +A  A+N  +  ++  + I+V +A         R +SA  R+    LYVS+L   +    + + FS     ++S+++ +   G  S G GF+ F  + EAE AI  L+G++ +G   P+ +KF
Sbjct:   34 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKF 199          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.018e-11
Identity = 56/204 (27.45%), Postives = 97/204 (47.55%), Query Frame = 3
Query:  168 RKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS---APARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN----DDVSESNRKRRMYLRINLQS 755
            + +YV NL    + A I  LF+  G   + ++I    G N  + FV       A AA+   + +++ G+ ++V +A      +   S+S   +  R   H  ++V +LS ++ +  ++  F+       ++VV +   G+S GYGFVSF  K +AE AI  + G+ L GR +R  +  +         ESN K+  Y  +  QS
Sbjct:    7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQS 209          

HSP 2 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 54/209 (25.84%), Postives = 96/209 (45.93%), Query Frame = 3
Query:  105 STLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS--------WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDV 704
            S  +DT+  T    TQ+      ++V +L    +  +IK  FAP G + D  ++K    GK++ + FV+  +  +A+ A+ Q   Q + GR IR  +A + K P P+ +  +  ++  +   VS  S          V S    +     F+P     + E       GY FV F++ E A  AI S++G  + G  ++  +G++  D+
Sbjct:   86 SQKKDTSSSTVVS-TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDM 290          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.636e-11
Identity = 56/204 (27.45%), Postives = 97/204 (47.55%), Query Frame = 3
Query:  168 RKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS---APARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN----DDVSESNRKRRMYLRINLQS 755
            + +YV NL    + A I  LF+  G   + ++I    G N  + FV       A AA+   + +++ G+ ++V +A      +   S+S   +  R   H  ++V +LS ++ +  ++  F+       ++VV +   G+S GYGFVSF  K +AE AI  + G+ L GR +R  +  +         ESN K+  Y  +  QS
Sbjct:    7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQS 209          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.442e-11
Identity = 53/198 (26.77%), Postives = 93/198 (46.97%), Query Frame = 3
Query:  147 TQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRP-------QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 716
            T ++   R ++   L       +++  F+  G V DV +I  +  + +R  A+V        + A+     Q V G  I V+ A + +K R        Q+ ++ P R     LYV +L + +    LR  F       S +++ +S  GRS GYGF++F+  E A+ A+  L+G EL GRP+++    +  D S ++
Sbjct:  146 TPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIG-LTGQRVLGVPIIVQ-ASQAEKNRAAAMANNLQKGSAGPMR-----LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSAS 336          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: YKX5_SCHPO (Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces pombe GN=SPAC328.05 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.872e-11
Identity = 53/212 (25.00%), Postives = 99/212 (46.70%), Query Frame = 3
Query:  108 TLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV----EFAKKFKKPRPQRSASAPARETQ--HKLYVSNLS---------------WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 680
            T +D  +    + TQ++   R++YV NL +     E+K      G V++ EI+    G ++  A +  ++ EEA+ A+     Q+  GR++ +    E   +F       SAS+  ++++   +L+V N+S               + VR   L++ F    + + + +   + EGRS G G V  ++ +EA  AI  L   + MGR L ++
Sbjct:   49 TERDPHLGNGQKYTQQE---RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNVSSISNPLYSFPRTLLPYNVRWQDLKDLFRQAGSVIRADIQM-NQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVR 256          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.872e-11
Identity = 57/228 (25.00%), Postives = 106/228 (46.49%), Query Frame = 3
Query:  147 TQKQNIRRKIYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK--------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRKRRMYLRINLQSHSYSNFWWXADYSA 797
            +QK++     +VF  +L    +  +IK+ FAP G + D  ++K    GK++ + FV+  +  +A+ A+     Q + GR IR  +A + K P P+ +     ++ + +  V+  S K        + S    +     F+P     + E       GY FV F+T E A  AI S++G  + G  ++  +G+++ D+++ N ++  Y +    S  Y N      Y A
Sbjct:  105 SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTK-NFQQVDYSQWGQWSQVYGNPQQYGQYMA 328          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.872e-11
Identity = 45/183 (24.59%), Postives = 85/183 (46.45%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRK 722
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V      KK R  +     A  T   +YV N++ +V     R  F    +  SS +  +   G+S G+GFV+F + E+A  A+  L+ KE  G+ L +   QK  +  E  RK
Sbjct:  151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIP-KKDRQSKFDEMKANFTN--IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRK 330          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: HNRPM_RAT (Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus GN=Hnrnpm PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 5.872e-11
Identity = 51/177 (28.81%), Postives = 84/177 (47.46%), Query Frame = 3
Query:  165 RRKIYVFNLPWSFSVAEIKNLFAP-CGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQK 692
            R + ++ N+P+      +K+L     G V  VE++    GK+R  A V     E  + A    +   +SGR ++V   K+       R A   A      ++V+NL +KV    L+E FS     V + ++ E  +G+S G G V+F    EA  AIS  +G+ L  RP+ +K  ++
Sbjct:   69 RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV---KEDPDGEHARRAMQKAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADIL-EDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 241          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.668e-11
Identity = 46/194 (23.71%), Postives = 89/194 (45.88%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRKRRMYLRINLQS 755
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E AQ A+   +   ++ + + V      KK R  +     A  T   +YV N+         R+ F       S+ +  ++  G+S G+GFV+F + + A AA+ +L+ K+  G+ L +   QK  +  E  RK+    RI   S
Sbjct:  145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIA-KKDRQSKFEEMKANFTN--VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKAS 335          
The following BLAST results are available for this feature:
BLAST of EY661766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
ELAV3_XENTR1.545e-1127.12ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]
TIA1_MOUSE2.018e-1127.45Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIA1_HUMAN2.636e-1127.45Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
RBM39_MOUSE3.442e-1126.77RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
YKX5_SCHPO5.872e-1125.00Uncharacterized RNA-binding protein C328.05 OS=Sch... [more]
TIAR_MOUSE5.872e-1125.00Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
PABP_MAGGR5.872e-1124.59Polyadenylate-binding protein, cytoplasmic and nuc... [more]
HNRPM_RAT5.872e-1128.81Heterogeneous nuclear ribonucleoprotein M OS=Rattu... [more]
PABP_COCIM7.668e-1123.71Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-036-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661766 ID=EY661766; Name=EY661766; organism=Citrus sinensis; type=EST; length=921bp
TTCGTCGACCCACGCGTCCGTGTATAAAGCTTCCCCATTCTTCCAATTCT
ACTCCTTCACTTATCTATAATTTTCCAACACGAAATGTTTGCCTTCAAGT
ATGCTCAACTTTGCAAGACACAACAGTACAAACAAAACCAGAACAAACAC
AGAAACAGAATATAAGGAGAAAGATATATGTGTTTAATTTGCCTTGGTCT
TTCTCTGTTGCAGAAATCAAGAATCTCTTTGCCCCATGTGGAACTGTTGT
AGATGTTGAGATTATAAAGCACAAAGGTGGGAAAAACAGAAACTTTGCAT
TTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGCTGCCGTTAATCAATTC
GACACTCAGGAAGTCTCTGGGAGGATTATAAGGGTTGAGTTTGCAAAGAA
ATTCAAGAAACCACGACCTCAACGTTCTGCAAGTGCCCCTGCTAGAGAAA
CACAACATAAGCTTTATGTGTCGAATCTTTCTTGGAAAGTTAGATCTACT
CATCTCAGAGAATTTTTTTCAGCTAATTTTAATCCTGTTTCCTCCAAGGT
TGTTTTTGAGAGCAATGAAGGAAGATCCGCTGGGTATGGCTTTGTCTCAT
TTGCCACAAAGGAAGAAGCAGAAGCAGCAATTTCTTCTTTGGATGGCAAG
GAGTTGATGGGGCGACCACTTCGTTTGAAATTCGGTCAAAAGAATGATGA
TGTATCAGAGAGTAACAGGAAGAGGAGGATGTATCTGAGGATCAATCTGC
AGAGTCATAGCTATTCCAATTTTTGGTGGNTTGCAGATTACAGCGCCATC
AAATCAGACACGCATTGCAGTATCGGTGAGCCAGCAGCAGCAGCGACAGT
GTCGAGTGCAACATATGCGTCGGGCCGTCCCATTGCAGGATGGCTGGGCT
GGCCCGGTGCTCGGGCAACAA
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