EY661526 | Citrus Genome Database

Overview


Name	EY661526
Unique Name	EY661526
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	894

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE9_RAT (Copine-9 OS=Rattus norvegicus GN=Cpne9 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.386e-47
Identity = 110/229 (48.03%), Postives = 148/229 (64.63%), Query Frame = 3

Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANRGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDL----QNGEISVVQA---LLAELPFSFLTYMXTXDIHP 674
            P  P SLHY+ P  + +AY  A+  VGE++Q YDSDK FPA+GFGA+ P +G +SH F LN ++      GI G++ +Y  +L  V L GPT F PVI+  A  A +   + G +Y+VLLIITDGV++D+ +TK+A+V AS LP+SI+I+GVG A F+ ME LD D  +   SS GR A RDIVQFVP RD      N  +S+ +    +LAE+P   L+YM T DI P
Sbjct:  313 PLQPTSLHYMSPY-QLSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPLNNNDEDPNCAGIEGVLESYFQSLRTVQLYGPTYFAPVINQVARAAAK--ISDGSQYYVLLIITDGVISDMTQTKEAIVSASSLPMSIIIVGVGPAMFEAMEELDGD--DVRVSSRGRYAERDIVQFVPFRDYVDRSGNQVLSMARLAKDVLAEIPEQLLSYMRTRDIQP 536

[Close]

BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE9_MOUSE (Copine-9 OS=Mus musculus GN=Cpne9 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.386e-47
Identity = 110/229 (48.03%), Postives = 148/229 (64.63%), Query Frame = 3

Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANRGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDL----QNGEISVVQA---LLAELPFSFLTYMXTXDIHP 674
            P  P SLHY+ P  + +AY  A+  VGE++Q YDSDK FPA+GFGA+ P +G +SH F LN ++      GI G++ +Y  +L  V L GPT F PVI+  A  A +   + G +Y+VLLIITDGV++D+ +TK+A+V AS LP+SI+I+GVG A F+ ME LD D  +   SS GR A RDIVQFVP RD      N  +S+ +    +LAE+P   L+YM T DI P
Sbjct:  313 PLQPTSLHYMSPY-QLSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPLNNNDEDPNCAGIEGVLESYFQSLRTVQLYGPTYFAPVINQVARAAAK--ISDGSQYYVLLIITDGVISDMTQTKEAIVSASSLPMSIIIVGVGPAMFEAMEELDGD--DVRVSSRGRYAERDIVQFVPFRDYVDRSGNQVLSMARLAKDVLAEIPEQLLSYMRTRDIQP 536

[Close]

BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE7_HUMAN (Copine-7 OS=Homo sapiens GN=CPNE7 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.386e-47
Identity = 105/224 (46.88%), Postives = 146/224 (65.18%), Query Frame = 3

Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAG-QSLANRGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDLQNGE-ISVVQALLAELPFSFLTYMXTXDIHP 674
            PR   SLHY++P  +PN Y +A++ VGE+ Q YDSDKRF A GFGAR P    VSH F +N +    E EGI G++ AY + L  V L GPT   P+IS  A +A  +    +  +Y++LLI+TDGVVTD+ +T++A+V+AS LP+SI+I+GVG ADF +M++LD D G  L S  G  A RDIVQFVP R+L+N    ++ + +LAE+P   + Y     + P
Sbjct:  396 PRNSCSLHYINPY-QPNEYLKALVSVGEICQDYDSDKRFSALGFGARIPPKYEVSHDFAINFNPEDDECEGIQGVVEAYQNCLPRVQLYGPTNVAPIISKVARVAAAEESTGKASQYYILLILTDGVVTDMADTREAIVRASRLPMSIIIVGVGNADFTDMQVLDGDDGV-LRSPRGEPALRDIVQFVPFRELKNASPAALAKCVLAEVPKQVVEYYSHRGLPP 617

[Close]

BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE4_MOUSE (Copine-4 OS=Mus musculus GN=Cpne4 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.332e-44
Identity = 100/224 (44.64%), Postives = 142/224 (63.39%), Query Frame = 3

Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANR-GQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDLQNGE-ISVVQALLAELPFSFLTYMXTXDIHP 674
            PR   SLHY+ P  +PN Y +A++ VGE+ Q YDSDK FPA+GFGAR P +  VSH F +N +    E  GI G++ AY S L  + L GPT   P+I   A  A +    +   +YF+LLI+TDGV+TD+ +T++A+V AS LP+S++I+GVG ADF +M++LD D G  L S  G    RDIVQFVP R+ ++    ++ +++LAE+P   + Y     I P
Sbjct:  321 PRNSCSLHYIHPY-QPNEYLKALVAVGEICQDYDSDKMFPAFGFGARIPPEYTVSHDFAINFNEDNPECAGIQGVVEAYQSCLPKLQLYGPTNIAPIIQKVAKSASEETNTKEASQYFILLILTDGVITDMADTREAIVHASHLPMSVIIVGVGNADFSDMQMLDGDDG-ILRSPKGEPVLRDIVQFVPFRNFKHASPAALAKSVLAEVPNQVVDYYNGKGIKP 542

[Close]

BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE4_HUMAN (Copine-4 OS=Homo sapiens GN=CPNE4 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.332e-44
Identity = 100/224 (44.64%), Postives = 142/224 (63.39%), Query Frame = 3

Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANR-GQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDLQNGE-ISVVQALLAELPFSFLTYMXTXDIHP 674
            PR   SLHY+ P  +PN Y +A++ VGE+ Q YDSDK FPA+GFGAR P +  VSH F +N +    E  GI G++ AY S L  + L GPT   P+I   A  A +    +   +YF+LLI+TDGV+TD+ +T++A+V AS LP+S++I+GVG ADF +M++LD D G  L S  G    RDIVQFVP R+ ++    ++ +++LAE+P   + Y     I P
Sbjct:  321 PRNSCSLHYIHPY-QPNEYLKALVAVGEICQDYDSDKMFPAFGFGARIPPEYTVSHDFAINFNEDNPECAGIQGVVEAYQSCLPKLQLYGPTNIAPIIQKVAKSASEETNTKEASQYFILLILTDGVITDMADTREAIVHASHLPMSVIIVGVGNADFSDMQMLDGDDG-ILRSPKGEPVLRDIVQFVPFRNFKHASPAALAKSVLAEVPNQVVDYYNGKGIKP 542

[Close]

BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE5_MOUSE (Copine-5 OS=Mus musculus GN=Cpne5 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.060e-44
Identity = 109/229 (47.60%), Postives = 144/229 (62.88%), Query Frame = 3

Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANRGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRD----LQNGEISVVQA---LLAELPFSFLTYMXTXDIHP 674
            P    SLHY+ P  + NAY  A+  VGE++Q YDSDK FPA GFGA+ P DG VSH F LNG+       GI GI+ AY S+L  V L GPT F PV+++ A  A  +    G +Y VLLIITDGV++D+ +TK+A+V A+ LP+SI+I+GVG A+F  M  LD D  +   SS G++A RDIVQFVP RD      N  +S+ +    +LAE+P   ++YM    I P
Sbjct:  342 PSQSTSLHYMSPY-QLNAYALALTAVGEIIQHYDSDKMFPALGFGAKLPPDGRVSHEFPLNGNQENPSCCGIDGILEAYHSSLRTVQLYGPTNFAPVVTHVARNA--AAVQDGSQYSVLLIITDGVISDMAQTKEAIVNAAKLPMSIIIVGVGQAEFDAMVELDGD--DVRISSRGKLAERDIVQFVPFRDYVDRTGNHVLSMARLARDVLAEIPDQLVSYMKAQGIRP 565

[Close]

BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE5_HUMAN (Copine-5 OS=Homo sapiens GN=CPNE5 PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.923e-43
Identity = 108/229 (47.16%), Postives = 143/229 (62.45%), Query Frame = 3

Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANRGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRD----LQNGEISVVQA---LLAELPFSFLTYMXTXDIHP 674
            P    SLHY+ P  + NAY  A+  VGE++Q YDSDK FPA GFGA+ P DG VSH F LNG+       GI GI+ AY  +L  V L GPT F PV+++ A  A  +    G +Y VLLIITDGV++D+ +TK+A+V A+ LP+SI+I+GVG A+F  M  LD D  +   SS G++A RDIVQFVP RD      N  +S+ +    +LAE+P   ++YM    I P
Sbjct:  342 PSQSTSLHYMSPY-QLNAYALALTAVGEIIQHYDSDKMFPALGFGAKLPPDGRVSHEFPLNGNQENPSCCGIDGILEAYHRSLRTVQLYGPTNFAPVVTHVARNA--AAVQDGSQYSVLLIITDGVISDMAQTKEAIVNAAKLPMSIIIVGVGQAEFDAMVELDGD--DVRISSRGKLAERDIVQFVPFRDYVDRTGNHVLSMARLARDVLAEIPDQLVSYMKAQGIRP 565

[Close]

BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE6_MOUSE (Copine-6 OS=Mus musculus GN=Cpne6 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.777e-42
Identity = 102/224 (45.54%), Postives = 139/224 (62.05%), Query Frame = 3

Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLAN-RGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDLQNGEIS-VVQALLAELPFSFLTYMXTXDIHP 674
            PR   SLH L P  +PN Y +A+  VG + Q YDSDKRFPA+GFGAR P +  VSH F +N      E E I G++ +Y   L  + L GPT   P+I+  A  A +  +  +  KY VLL++TDGVV+D+ ET+ A+V+AS LP+SI+I+GVG ADF +M +LD D G  L    G  A+RDIVQFVP RD ++   S + + +LAE+P   + Y  +  I P
Sbjct:  320 PRSSQSLHCLSPR-QPNHYLQALRTVGGICQDYDSDKRFPAFGFGARIPPNFEVSHDFAINFDPENPECEEISGVIASYRRCLPQIQLYGPTNVAPIINRVAEPAQREQSTGQATKYSVLLVLTDGVVSDMAETRTAIVRASRLPMSIIIVGVGNADFSDMRLLDGDDGP-LRCPKGVPAARDIVQFVPFRDFKDAAPSALAKCVLAEVPRQVVEYYASQGISP 541

[Close]

BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE6_HUMAN (Copine-6 OS=Homo sapiens GN=CPNE6 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 2.777e-42
Identity = 102/224 (45.54%), Postives = 139/224 (62.05%), Query Frame = 3

Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLAN-RGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDLQNGEIS-VVQALLAELPFSFLTYMXTXDIHP 674
            PR   SLH L P  +PN Y +A+  VG + Q YDSDKRFPA+GFGAR P +  VSH F +N      E E I G++ +Y   L  + L GPT   P+I+  A  A +  +  +  KY VLL++TDGVV+D+ ET+ A+V+AS LP+SI+I+GVG ADF +M +LD D G  L    G  A+RDIVQFVP RD ++   S + + +LAE+P   + Y  +  I P
Sbjct:  320 PRSSQSLHCLSPR-QPNHYLQALRAVGGICQDYDSDKRFPAFGFGARIPPNFEVSHDFAINFDPENPECEEISGVIASYRRCLPQIQLYGPTNVAPIINRVAEPAQREQSTGQATKYSVLLVLTDGVVSDMAETRTAIVRASRLPMSIIIVGVGNADFSDMRLLDGDDGP-LRCPRGVPAARDIVQFVPFRDFKDAAPSALAKCVLAEVPRQVVEYYASQGISP 541

[Close]

BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE6_BOVIN (Copine-6 OS=Bos taurus GN=CPNE6 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.777e-42
Identity = 102/224 (45.54%), Postives = 139/224 (62.05%), Query Frame = 3

Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLAN-RGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDLQNGEIS-VVQALLAELPFSFLTYMXTXDIHP 674
            PR   SLH L P  +PN Y +A+  VG + Q YDSDKRFPA+GFGAR P +  VSH F +N      E E I G++ +Y   L  + L GPT   P+I+  A  A +  +  +  KY VLL++TDGVV+D+ ET+ A+V+AS LP+SI+I+GVG ADF +M +LD D G  L    G  A+RDIVQFVP RD ++   S + + +LAE+P   + Y  +  I P
Sbjct:  320 PRSSQSLHCLSPR-QPNHYLQALRAVGGICQDYDSDKRFPAFGFGARIPPNFEVSHDFAINFDPENPECEEISGVIASYRRCLPQIQLYGPTNVAPIINRVAGPAQREQSTGQATKYSVLLVLTDGVVSDMAETRTAIVRASRLPMSIIIVGVGNADFSDMRLLDGDDG-TLRCPRGVPAARDIVQFVPFRDFKDASPSALAKCVLAEVPRQVVEYYASQGISP 541

The following BLAST results are available for this feature:

BLAST of EY661526 vs. ExPASy Swiss-Prot

BLAST of EY661526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33


Match Name	E-value	Identity	Description
CPNE9_RAT	6.386e-47	48.03	Copine-9 OS=Rattus norvegicus GN=Cpne9 PE=2 SV=1	[more]
CPNE9_MOUSE	6.386e-47	48.03	Copine-9 OS=Mus musculus GN=Cpne9 PE=2 SV=1	[more]
CPNE7_HUMAN	6.386e-47	46.88	Copine-7 OS=Homo sapiens GN=CPNE7 PE=2 SV=1	[more]
CPNE4_MOUSE	1.332e-44	44.64	Copine-4 OS=Mus musculus GN=Cpne4 PE=2 SV=1	[more]
CPNE4_HUMAN	1.332e-44	44.64	Copine-4 OS=Homo sapiens GN=CPNE4 PE=2 SV=1	[more]
CPNE5_MOUSE	5.060e-44	47.60	Copine-5 OS=Mus musculus GN=Cpne5 PE=2 SV=1	[more]
CPNE5_HUMAN	1.923e-43	47.16	Copine-5 OS=Homo sapiens GN=CPNE5 PE=1 SV=2	[more]
CPNE6_MOUSE	2.777e-42	45.54	Copine-6 OS=Mus musculus GN=Cpne6 PE=1 SV=1	[more]
CPNE6_HUMAN	2.777e-42	45.54	Copine-6 OS=Homo sapiens GN=CPNE6 PE=1 SV=3	[more]
CPNE6_BOVIN	2.777e-42	45.54	Copine-6 OS=Bos taurus GN=CPNE6 PE=2 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-101-034-B03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY661526 ID=EY661526; Name=EY661526; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGCCCCGTCTCCCTGATTCCTTGCATTATCTTGATCCCTCA
GGCCGGCCAAATGCATATCAAAGAGCAATCCTAGAGGTCGGAGAGGTATT
GCAGGTTTATGACTCTGATAAGCGCTTTCCTGCATGGGGTTTTGGGGCAA
GACCAATCGATGGTCCTGTCTCACATTGTTTCAACTTGAATGGAAGCAAT
AGTTACTGTGAGGTTGAAGGAATCCCTGGAATTATGATGGCATATACAAG
TGCTCTCCATAATGTAAATCTTGCTGGGCCTACACTATTTGGACCTGTCA
TCAGCAATGCTGCACTTATTGCTGGCCAGTCTCTTGCCAACCGTGGACAA
AAATACTTTGTTTTGTTGATAATAACGGATGGAGTAGTAACGGATCTGCA
AGAAACGAAGGATGCCTTAGTGAAAGCATCTGACCTTCCGCTGTCAATTC
TCATCATAGGAGTTGGAGGAGCTGACTTCAAAGAAATGGAGATTCTAGAT
GCTGACAAGGGAGAGAGGCTTGAAAGTTCAACTGGTCGTGTTGCTTCGCG
TGATATAGTTCAATTTGTTCCTCTCAGGGATTTACAGAATGGAGAGATTT
CTGTGGTTCAAGCACTTTTAGCAGAATTGCCTTTCTCATTTTTAACTTAC
ATGCNGACCANAGATATCCACCCAAGTACTTGATTTGTGTAAAAGATGTA
CATATGAATAGTATTTTCTATCACTGGCTTTCATGCCATAAAGTTTGCAG
TCTTGTCTTTCATCGTACCAATGCCCACAGTTTCTAAGGGTTTGATCAGG
CCTCTTCATTTAGTCGAAAATGATACNTCATCATGCCTATCTGAGAAACC
GGGGATGTGCGTATTGCATTGCGGAAAATTTTATCAGGGGGTGC