EY661524

Overview
NameEY661524
Unique NameEY661524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5486 contig Csv1_Contig5486:382..1303. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY661524 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.773e-15
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 2 
Query:   17 EEIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 175
            ++ID+H+YHD+YMK KGNVFKNKRVLME IHK KAEK R K L+DQ EA+R K
Sbjct:  113 KKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQK 165
[Close]
BLAST of EY661524 vs. ExPASy Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.738e-15
Identity = 35/53 (66.04%), Postives = 47/53 (88.68%), Query Frame = 2 
Query:   17 EEIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 175
            ++ID+HMYH +Y++ KGNVFKNKR+LME IHK KA++AR+K LSDQ EA+R+K
Sbjct:  113 KKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSK 165
[Close]
BLAST of EY661524 vs. ExPASy Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.800e-15
Identity = 35/53 (66.04%), Postives = 46/53 (86.79%), Query Frame = 2 
Query:   17 EEIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 175
            ++ID+HMYH +Y++ KGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R K
Sbjct:  113 KKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTK 165
[Close]
BLAST of EY661524 vs. ExPASy Swiss-Prot
Match: RL19_DICDI (60S ribosomal protein L19 OS=Dictyostelium discoideum GN=rpl19 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 2 
Query:   17 EEIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 178
            ++IDKH Y ++Y+K KGNVFKNKR L+E I KSK EK REK + DQ +A+R KN
Sbjct:  113 KKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQAQARRNKN 166
The following BLAST results are available for this feature:
BLAST of EY661524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RL19_DROME1.773e-1571.7060S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19_ICTPU6.738e-1566.0460S ribosomal protein L19 OS=Ictalurus punctatus G... [more]
RL19_DANRE8.800e-1566.0460S ribosomal protein L19 OS=Danio rerio GN=rpl19 ... [more]
RL19_DICDI4.088e-1261.1160S ribosomal protein L19 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-034-B01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661524 ID=EY661524; Name=EY661524; organism=Citrus sinensis; type=EST; length=924bp
CCACGCGTCCGGAGTCGAAGAAATTGACAAGCACATGTACCATGACATGT
ACATGAAGGTCAAGGGTAATGTATTTAAGAACAAGCGTGTCCTCATGGAG
AGTATCCACAAGTCAAAGGCTGAAAAGGCAAGAGAGAAGACTCTTTCTGA
CCAGTTTGAGGCTAAGCGCGCCAAGAACAAGGCCAGCAGGGAGAGAAAGC
TGGCCAGGAGAGAAGAGCGACTAGCACAGGGACCTGGAGAGAAGGCAGTA
CCAGCACCCCAACCAGCTGAGGGANCTAAGAAAGCTAAGAAGTGATCGCT
GATACATCGATGATGGAGACTGAAGATTGATAACTTATATATGTTAATGT
TGGTTCTGGTTTCTTTGTAGGAGTTTGTTTCCCAAGTTATTTTGTTTTCT
GTTTAATGGCAAATTATTTACTTATAAAGCCTTGAATTTTGGAACCATAT
GAACCCGTTCGAAGTTCCNGGCTATGTTGAATGATGAGTATTATGTTCAT
TAAAAACAAAAACAGCAGGGAAAGGAGNTGCATATCATAACAGAAAGTGA
AGGTCCTGGTGGGCATAGGATATGGTCTCCCCTGATATCGCGTGTTCCTC
TTACCCGNNACATAACGGGGGGGGGCGGTCTAAGGAGTATCAGGTTGTGT
NAANGTGGGGGGGCACACCCTAACTCCTGTTCTGGGGCGCCCCAANANAC
CATCACTGGCTGCGAGTTGCTAAGAAACACAGTAGAAGAAACACCGCGAT
AAGTCCCCTATGCACAGGGGCGGACGCGCCCCCCTCCTTCAGTGGGTGAG
AAATACAAAAAGGGCACGGCCCGCGAGTGTCTTTCCCACTAGGTGCGCTC
CTGTGAGGGATTGGAGACACCACCTCTGACCGCAGCTCAAGCTGCGTGGC
GGGTGTGTGATCCGACACGTCGAG
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