EY661501

Overview
NameEY661501
Unique NameEY661501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.062e-12
Identity = 36/115 (31.30%), Postives = 65/115 (56.52%), Query Frame = 2
Query:  140 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            E  E  E   +F  +G+ D +     +  F KP+ IQ +++   ++GRD+I  AQ+G+GKT+  A+ V Q++  + + +  ++L+PTRELA    +   A+G  + ++    VGG
Sbjct:   55 EVDESEEQTKTFKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSLYENPQPLYCVVLAPTRELAYQISETFEALGSAMGLRTAVVVGG 169          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: RRP3_EMENI (ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans GN=rrp3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.062e-12
Identity = 37/105 (35.24%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  170 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            SF  +GI D L       G++ P+ IQ +A+   ++GRDVI  A++G+GKT+  AL + Q +  + + +  L+L+PTRELA    +    +G  I ++    VGG
Sbjct:   47 SFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQTLFGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGG 151          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DBP8_CRYNE (ATP-dependent RNA helicase DBP8 OS=Cryptococcus neoformans GN=DBP8 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.062e-12
Identity = 45/143 (31.47%), Postives = 71/143 (49.65%), Query Frame = 2
Query:  161 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATHTEKVILAIGDFINIQAHACVGGKVSGKILGS*SMEFMWCLELRAESVI*LRGKLCVL 589
            A  +F+++G+   L+  +     +KP+ IQ   V PI+ GRD I  A++G+GKT   AL + + +      V A++L+PTRELA    +  L IG  + +     VGG           M+    LE R   ++   G+LC L
Sbjct:  150 ADVTFESLGLSHPLITALASINIKKPTEIQAACVEPILSGRDCIGGAKTGSGKTMAFALPIVERIARDPFGVWAVVLTPTRELAYQLSEQFLVIGKPLGLTTATIVGGMD--------MMKQAQELEARPHIIVATPGRLCDL 284          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DBP10_NEOFI (ATP-dependent RNA helicase dbp10 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp10 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.062e-12
Identity = 39/106 (36.79%), Postives = 67/106 (63.21%), Query Frame = 2
Query:  173 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA--LILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            F AMG+  +LL+ I + GF  P+ IQ++ +  I+  +DV+  A++G+GKT+   + + + + + S +V A  LILSP+RELA  T KV+  +G   ++++   VGG
Sbjct:   92 FQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKSVLLVGG 197          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DBP10_ASPTN (ATP-dependent RNA helicase dbp10 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp10 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.062e-12
Identity = 38/106 (35.85%), Postives = 66/106 (62.26%), Query Frame = 2
Query:  173 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE--VQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            F AMG+  +LL+ I + GF  P+ IQ++ +  I+  RDV+  A++G+GKT+   + + + + + S +   + LILSP+RELA  T KV+  +G   ++++   VGG
Sbjct:   91 FQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMDDRDVVGMARTGSGKTAAFVIPMIEKLKSHSSKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGG 196          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DED1_CANGA (ATP-dependent RNA helicase DED1 OS=Candida glabrata GN=DED1 PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 5.150e-12
Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 2
Query:  158 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV-CQTVDTSSRE--------------VQALILSPTRELAT 415
            EAIT F +  +   LL  I    F KP+ +Q+ +V  + KGRD++A AQ+G+GKT      V  ++  T   E                A++++PTRELAT
Sbjct:  142 EAITEFTSPPLDSLLLENIKLARFTKPTPVQKYSVPIVSKGRDLMACAQTGSGKTGGFLFPVLSESFLTGPAEKAANDGYSYQRKAFPTAVVMAPTRELAT 242          

HSP 2 Score: 43.5134 bits (101), Expect = 5.150e-12
Identity = 19/56 (33.93%), Postives = 32/56 (57.14%), Query Frame = 1
Query:  490 VGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQI 657
            +G  +R+++HG  ++  TP R+ D+++R  +    +K L LDE D ML      QI
Sbjct:  268 IGNQMREMDHGCDLLVATPGRLNDLLERGKVSLSNVKYLVLDEADRMLDMGFEPQI 323          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: RH41_ORYSJ (DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sativa subsp. japonica GN=Os02g0201900 PE=2 SV=2)

HSP 1 Score: 48.1358 bits (113), Expect = 5.170e-12
Identity = 29/116 (25.00%), Postives = 55/116 (47.41%), Query Frame = 2
Query:  158 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV---CQTVD----TSSREVQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            + I  F + G+ + L+  +   G+  P+ +Q + +   I  R ++  A +G+GKT+   + +   C  V     T  +   A++L+PTREL    E+    +G  +  +    VGG
Sbjct:  134 DPIMCFSSSGLPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPIIAHCSHVRSERCTDKQGPLAIVLAPTRELCLQVEEQAKVLGKGLPFKTALVVGG 249          

HSP 2 Score: 43.8986 bits (102), Expect = 5.170e-12
Identity = 23/86 (26.74%), Postives = 44/86 (51.16%), Query Frame = 1
Query:  490 VGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQIYDGDRYLHRIFRWFEICHPSSGILEMTTNS 747
            + + I ++E+G+ ++ GTP R+ D++ +  +    + +  LDE D +L R   DQ+        +IF+   + HP   +   T NS
Sbjct:  252 LAQQIYRIENGIELIVGTPGRLIDLLMKHNVDLNKVDVFVLDEVDCLLERGFRDQVM-------QIFQ--ALSHPQVMMFSATVNS 328          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: SRMB_ECOLI (ATP-dependent RNA helicase srmB OS=Escherichia coli (strain K12) GN=srmB PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 5.199e-12
Identity = 36/111 (32.43%), Postives = 55/111 (49.55%), Query Frame = 2
Query:  164 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV----DTSSREVQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            +T+F  + + + LL  +   GF +P+AIQ  A+ P + GRDV+  A +GTGKT+   L   Q +       S   + LIL+PTRELA         +    ++      GG
Sbjct:    3 VTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGG 113          

HSP 2 Score: 29.261 bits (64), Expect = 5.199e-12
Identity = 14/35 (40.00%), Postives = 19/35 (54.29%), Query Frame = 1
Query:  529 VVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEML 633
            +V  T  R+   IK +    RA++ L LDE D ML
Sbjct:  129 IVVATTGRLLQYIKEENFDCRAVETLILDEADRML 163          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: RRP3_CHAGB (ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum GN=RRP3 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.305e-12
Identity = 36/105 (34.29%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  170 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            +F  +GI D L     + G++KP+ IQQ ++   ++ RD+I  A++G+GKT   AL + Q +    + + AL+L+PTRELA    +   A+G  I+++    +GG
Sbjct:   66 TFQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQALLDKPQPLFALVLAPTRELAAQIAQSFEALGSLISLRCALILGG 170          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: RH36_ARATH (DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.305e-12
Identity = 36/106 (33.96%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  167 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            T+F+ +G+ +  +    + G  KP+ +Q   V  I+ GRDV+  AQ+G+GKT+  AL +   +      V AL+++PTRELA    +   A+G  +N++    VGG
Sbjct:   58 TNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGG 163          
The following BLAST results are available for this feature:
BLAST of EY661501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 438
Match NameE-valueIdentityDescription
RRP3_YARLI4.062e-1231.30ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipol... [more]
RRP3_EMENI4.062e-1235.24ATP-dependent rRNA helicase rrp3 OS=Emericella nid... [more]
DBP8_CRYNE4.062e-1231.47ATP-dependent RNA helicase DBP8 OS=Cryptococcus ne... [more]
DBP10_NEOFI4.062e-1236.79ATP-dependent RNA helicase dbp10 OS=Neosartorya fi... [more]
DBP10_ASPTN4.062e-1235.85ATP-dependent RNA helicase dbp10 OS=Aspergillus te... [more]
DED1_CANGA5.150e-1234.65ATP-dependent RNA helicase DED1 OS=Candida glabrat... [more]
RH41_ORYSJ5.170e-1225.00DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sa... [more]
SRMB_ECOLI5.199e-1232.43ATP-dependent RNA helicase srmB OS=Escherichia col... [more]
RRP3_CHAGB5.305e-1234.29ATP-dependent rRNA helicase RRP3 OS=Chaetomium glo... [more]
RH36_ARATH5.305e-1233.96DEAD-box ATP-dependent RNA helicase 36 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-H01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661501 ID=EY661501; Name=EY661501; organism=Citrus sinensis; type=EST; length=913bp
CTCACCTGGTTGACGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAAT
TGTTGCGAATTTCGTGCTAGATGGCGGCGGCGACGGCTATGCGGAGGAGA
GGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGGA
AGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGATC
TGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACAA
CAGAGGGCCGTTATGCCAATAATAAAGGGCCGTGATGTAATTGCACAGGC
CCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAGA
CGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTACG
AGGGAGTTGGCGACGCACACAGAGAAAGTGATTTTGGCAATTGGTGATTT
TATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAGTGTCGGGGAAGA
TATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGAGCA
GAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTAAA
TTATTGGCGCTTGATGAGCCCGATGAGATGCTGAGCAGACGGCTCCATGA
TCAAATTTATGATGGGGACCGTTATCTCCACCGGATCTTCAGGTGGTTTG
AGATCTGCCACCCTTCCTCCGGAATTTTGGAGATGACGACAAATTCCTGG
AAGATCCTGGAAAGATTCTTGGAAACGGGATGAAGTACTTTTGAAGGGAT
CAACCAATTTTTGCTGCAATGGAAAATAGGAGTGAAAATTGGTCCCCCGG
GGACTTTTGAAACCCTACCTTTCACAGGTTGTATTCTTGGACCCAAAGGA
AGGGGGTTGGTAA
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