EY661501

Overview
NameEY661501
Unique NameEY661501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DBP10_MAGGR (ATP-dependent RNA helicase DBP10 OS=Magnaporthe grisea GN=DBP10 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.928e-12
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 2
Query:  173 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV--QALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            F AMG+   LL+ I + GF  P+ IQ++++  I+  RDV+  A++G+GKT+   + + + +   S  V  +ALI+SP+RELA  T KV+   G   +++    VGG
Sbjct:   92 FQAMGLNPSLLQAITRKGFAVPTPIQRKSIPLILDRRDVVGMARTGSGKTAAFVIPMIERLRAHSARVGARALIMSPSRELALQTLKVVKEFGKGTDLKTVLLVGG 197          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DBP10_EMENI (ATP-dependent RNA helicase dbp10 OS=Emericella nidulans GN=dbp10 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.928e-12
Identity = 37/106 (34.91%), Postives = 67/106 (63.21%), Query Frame = 2
Query:  173 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE--VQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            F AMG+  +LL+ I + GF  P+ IQ++ +  I++ +DV+  A++G+GKT+   + + + + + S +   + LILSP+RELA  T KV+  +G   ++++   VGG
Sbjct:   93 FQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGG 198          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: RH24_ORYSJ (DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica GN=Os03g0308500 PE=2 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 8.629e-12
Identity = 35/112 (31.25%), Postives = 56/112 (50.00%), Query Frame = 2
Query:  164 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL-TVCQTVDTSSREVQ----ALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            I SF   G    L+  I + G+EKP+ IQ +A+  ++ GRD+I  A++G+GKT+   L  +   +D    E +     ++ +PTRELA              N++  A  GG
Sbjct:  218 IKSFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGG 329          

HSP 2 Score: 37.3502 bits (85), Expect = 8.629e-12
Identity = 18/54 (33.33%), Postives = 27/54 (50.00%), Query Frame = 1
Query:  496 EDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQI 657
            +  ++L+ G  +V  TP R+ D++K K L+      L LDE D M       QI
Sbjct:  334 DQFKELKAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQI 387          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: RH24_ARATH (DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana GN=RH24 PE=1 SV=2)

HSP 1 Score: 51.9878 bits (123), Expect = 8.632e-12
Identity = 30/89 (33.71%), Postives = 51/89 (57.30%), Query Frame = 2
Query:  164 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQ------ALILSPTRELA 412
            + +F+  G    ++  I +  +EKP+AIQ +A+  ++ GRDVI  A++G+GKT+   L +   +     E+Q       +I +PTRELA
Sbjct:  227 VKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHI-MDQPELQRDEGPIGVICAPTRELA 314          

HSP 2 Score: 39.2762 bits (90), Expect = 8.632e-12
Identity = 19/54 (35.19%), Postives = 26/54 (48.15%), Query Frame = 1
Query:  496 EDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQI 657
            E  ++L+ G  +V  TP R+ DM+K K L       L LDE D M       Q+
Sbjct:  343 EQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQV 396          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: SUB2_YEAST (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae GN=SUB2 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 8.762e-12
Identity = 33/82 (40.24%), Postives = 46/82 (56.10%), Query Frame = 2
Query:  167 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 412
            T F    +K +L R I   GFE PS +QQ  +   I G DV+ QA+SG GKT++  L+  Q +D    EV  +++   RELA
Sbjct:   62 TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELA 143          

HSP 2 Score: 28.1054 bits (61), Expect = 8.762e-12
Identity = 17/66 (25.76%), Postives = 31/66 (46.97%), Query Frame = 1
Query:  496 EDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQIYDGDRYLHRIFR 693
            E ++  +   H+V  TP R+  +++ K +    +K   +DE D++L         D  R +  IFR
Sbjct:  176 ELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEE------LDMRRDVQEIFR 235          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: SUB2_YEAS7 (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae (strain YJM789) GN=SUB2 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 8.762e-12
Identity = 33/82 (40.24%), Postives = 46/82 (56.10%), Query Frame = 2
Query:  167 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 412
            T F    +K +L R I   GFE PS +QQ  +   I G DV+ QA+SG GKT++  L+  Q +D    EV  +++   RELA
Sbjct:   62 TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELA 143          

HSP 2 Score: 28.1054 bits (61), Expect = 8.762e-12
Identity = 17/66 (25.76%), Postives = 31/66 (46.97%), Query Frame = 1
Query:  496 EDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQIYDGDRYLHRIFR 693
            E ++  +   H+V  TP R+  +++ K +    +K   +DE D++L         D  R +  IFR
Sbjct:  176 ELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEE------LDMRRDVQEIFR 235          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: SUB2_CANGA (ATP-dependent RNA helicase SUB2 OS=Candida glabrata GN=SUB2 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 8.768e-12
Identity = 33/82 (40.24%), Postives = 46/82 (56.10%), Query Frame = 2
Query:  167 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 412
            T F    +K +L R I   GFE PS +QQ  +   I G DV+ QA+SG GKT++  L+  Q +D    EV  +++   RELA
Sbjct:   55 TGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELA 136          

HSP 2 Score: 27.7202 bits (60), Expect = 8.768e-12
Identity = 17/66 (25.76%), Postives = 31/66 (46.97%), Query Frame = 1
Query:  496 EDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQIYDGDRYLHRIFR 693
            E ++  +   H+V  TP R+  +++ K +    +K   +DE D++L         D  R +  IFR
Sbjct:  169 ELLKNKDTAPHIVVATPGRLKALVRDKMIDLSHVKNFVIDECDKVLEE------LDMRRDVQEIFR 228          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DBP10_COCIM (ATP-dependent RNA helicase DBP10 OS=Coccidioides immitis GN=DBP10 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.049e-12
Identity = 37/106 (34.91%), Postives = 66/106 (62.26%), Query Frame = 2
Query:  173 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV--QALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            F AMG+  +LL+ I + GF  P+ IQ++ +  ++  +DV+  A++G+GKT+   + + + + + S +V  + LILSP+RELA  T KV+  +G   +++    VGG
Sbjct:   83 FQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKVGSRGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGG 188          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: PRP5_DEBHA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Debaryomyces hansenii GN=PRP5 PE=3 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 1.115e-11
Identity = 30/91 (32.97%), Postives = 48/91 (52.75%), Query Frame = 2
Query:  227 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQ-----ALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            +  PS+IQ +A+  I+ GRD+I  A++G+GKT    L + + +       +      LI++PTRELA    K +      +NI +  C GG
Sbjct:  337 YSSPSSIQAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPLLRHIQDQPPLKKGDGPIGLIMTPTRELALQIHKELNHFTKKLNISSCCCFGG 427          

HSP 2 Score: 38.1206 bits (87), Expect = 1.115e-11
Identity = 20/69 (28.99%), Postives = 34/69 (49.28%), Query Frame = 1
Query:  463 STCVCWR-QSVGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRT---RAIKLLALDEPDEMLSRRLHDQI 657
            S+C C+   S+   I +L+ G  ++ GTP R+ D++   + R    + +  L LDE D M       Q+
Sbjct:  420 SSCCCFGGSSIESQIAELKKGAQIIVGTPGRIIDLLAANSGRVTNLQRVTYLVLDEADRMFDMGFEPQV 488          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DDX50_HUMAN (ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 1.121e-11
Identity = 29/92 (31.52%), Postives = 50/92 (54.35%), Query Frame = 2
Query:  170 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS------SREVQALILSPTRELATHTEK 427
            +F    I ++ ++ +   G      IQ +   P+ +G+D+IAQA++GTGKT   A+ + + +  +      SR  + L+L+PTRELA    K
Sbjct:  138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAK 229          

HSP 2 Score: 40.4318 bits (93), Expect = 1.121e-11
Identity = 23/105 (21.90%), Postives = 50/105 (47.62%), Query Frame = 1
Query:  469 CVCWRQSVGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQIYDGDRYLHRIFRWFEICHPSSGILEMTTNSW--KILERFLET 777
            C     S    I  + +G+ ++ GTP R+ D ++   L    ++ + LDE D+ML     +Q+ D    +H  ++     +P + +   T   W  K+ ++++++
Sbjct:  242 CFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVED---IIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKS 343          
The following BLAST results are available for this feature:
BLAST of EY661501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 438
Match NameE-valueIdentityDescription
DBP10_MAGGR6.928e-1236.79ATP-dependent RNA helicase DBP10 OS=Magnaporthe gr... [more]
DBP10_EMENI6.928e-1234.91ATP-dependent RNA helicase dbp10 OS=Emericella nid... [more]
RH24_ORYSJ8.629e-1231.25DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sa... [more]
RH24_ARATH8.632e-1233.71DEAD-box ATP-dependent RNA helicase 24 OS=Arabidop... [more]
SUB2_YEAST8.762e-1240.24ATP-dependent RNA helicase SUB2 OS=Saccharomyces c... [more]
SUB2_YEAS78.762e-1240.24ATP-dependent RNA helicase SUB2 OS=Saccharomyces c... [more]
SUB2_CANGA8.768e-1240.24ATP-dependent RNA helicase SUB2 OS=Candida glabrat... [more]
DBP10_COCIM9.049e-1234.91ATP-dependent RNA helicase DBP10 OS=Coccidioides i... [more]
PRP5_DEBHA1.115e-1132.97Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DDX50_HUMAN1.121e-1131.52ATP-dependent RNA helicase DDX50 OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-H01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661501 ID=EY661501; Name=EY661501; organism=Citrus sinensis; type=EST; length=913bp
CTCACCTGGTTGACGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAAT
TGTTGCGAATTTCGTGCTAGATGGCGGCGGCGACGGCTATGCGGAGGAGA
GGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGGA
AGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGATC
TGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACAA
CAGAGGGCCGTTATGCCAATAATAAAGGGCCGTGATGTAATTGCACAGGC
CCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAGA
CGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTACG
AGGGAGTTGGCGACGCACACAGAGAAAGTGATTTTGGCAATTGGTGATTT
TATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAGTGTCGGGGAAGA
TATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGAGCA
GAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTAAA
TTATTGGCGCTTGATGAGCCCGATGAGATGCTGAGCAGACGGCTCCATGA
TCAAATTTATGATGGGGACCGTTATCTCCACCGGATCTTCAGGTGGTTTG
AGATCTGCCACCCTTCCTCCGGAATTTTGGAGATGACGACAAATTCCTGG
AAGATCCTGGAAAGATTCTTGGAAACGGGATGAAGTACTTTTGAAGGGAT
CAACCAATTTTTGCTGCAATGGAAAATAGGAGTGAAAATTGGTCCCCCGG
GGACTTTTGAAACCCTACCTTTCACAGGTTGTATTCTTGGACCCAAAGGA
AGGGGGTTGGTAA
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