EY661501

Overview
NameEY661501
Unique NameEY661501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DDX3Y_PANTR (ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes GN=DDX3Y PE=2 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 3.194e-11
Identity = 23/56 (41.07%), Postives = 31/56 (55.36%), Query Frame = 1
Query:  490 VGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQI 657
            +G+ IR LE G H++  TP R+ DM++R  +     K L LDE D ML      QI
Sbjct:  304 IGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 359          

HSP 2 Score: 42.743 bits (99), Expect = 3.194e-11
Identity = 32/102 (31.37%), Postives = 54/102 (52.94%), Query Frame = 2
Query:  164 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTS---------------SREVQ---ALILSPTRELA 412
            I +F  + + + ++  I    + +P+ +Q+ A+ PIIKG RD++A AQ+G+GKT+   L +   + T                 R  Q   +L+L+PTRELA
Sbjct:  177 IENFGDIDMGEIIMGNIQLTRYTRPTPVQKHAI-PIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELA 277          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DDX3Y_HUMAN (ATP-dependent RNA helicase DDX3Y OS=Homo sapiens GN=DDX3Y PE=1 SV=2)

HSP 1 Score: 46.595 bits (109), Expect = 3.194e-11
Identity = 23/56 (41.07%), Postives = 31/56 (55.36%), Query Frame = 1
Query:  490 VGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQI 657
            +G+ IR LE G H++  TP R+ DM++R  +     K L LDE D ML      QI
Sbjct:  304 IGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 359          

HSP 2 Score: 42.743 bits (99), Expect = 3.194e-11
Identity = 32/102 (31.37%), Postives = 54/102 (52.94%), Query Frame = 2
Query:  164 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTS---------------SREVQ---ALILSPTRELA 412
            I +F  + + + ++  I    + +P+ +Q+ A+ PIIKG RD++A AQ+G+GKT+   L +   + T                 R  Q   +L+L+PTRELA
Sbjct:  177 IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAI-PIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELA 277          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DDX3Y_PONAB (ATP-dependent RNA helicase DDX3Y OS=Pongo abelii GN=DDX3Y PE=2 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 3.194e-11
Identity = 23/56 (41.07%), Postives = 31/56 (55.36%), Query Frame = 1
Query:  490 VGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQI 657
            +G+ IR LE G H++  TP R+ DM++R  +     K L LDE D ML      QI
Sbjct:  304 IGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 359          

HSP 2 Score: 42.743 bits (99), Expect = 3.194e-11
Identity = 32/102 (31.37%), Postives = 54/102 (52.94%), Query Frame = 2
Query:  164 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTS---------------SREVQ---ALILSPTRELA 412
            I +F  + + + ++  I    + +P+ +Q+ A+ PIIKG RD++A AQ+G+GKT+   L +   + T                 R  Q   +L+L+PTRELA
Sbjct:  177 IENFSDIDMGEIIMGNIELTRYTRPTPVQKHAI-PIIKGKRDLMACAQTGSGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELA 277          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DDX54_DICDI (ATP-dependent RNA helicase ddx54 OS=Dictyostelium discoideum GN=helA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.439e-11
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  140 ETTEGVEAITS-FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE--VQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            ETT   +  T  F +M +  +LL+ I + GF  P+ IQ++++  I+ G D++  A++G+GKT    + + Q +   S    V+A+ILSPTRELA  T KV+        ++    VGG
Sbjct:  220 ETTSKKKKKTGGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTTVGVRAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGG 337          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DED1_PHANO (ATP-dependent RNA helicase DED1 OS=Phaeosphaeria nodorum GN=DED1 PE=3 SV=1)

HSP 1 Score: 45.4394 bits (106), Expect = 4.139e-11
Identity = 21/56 (37.50%), Postives = 32/56 (57.14%), Query Frame = 1
Query:  490 VGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQI 657
            +G  +R++E G  ++  TP R+ D+I+R  +   +IK L LDE D ML      QI
Sbjct:  326 IGSQLRQIERGCDLLVATPGRLVDLIERGRISLASIKYLVLDEADRMLDMGFEPQI 381          

HSP 2 Score: 43.5134 bits (101), Expect = 4.139e-11
Identity = 32/103 (31.07%), Postives = 50/103 (48.54%), Query Frame = 2
Query:  158 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTS----MIALTVCQTVDTSSREVQA-------------LILSPTRELAT 415
            E +T F    + D LL  I   G++ P+ +Q+ ++  ++ GRD++A AQ+G+GKT      I     Q   +     QA             LIL+PTREL +
Sbjct:  198 EPVTRFTNPPLDDHLLSNIELSGYKVPTPVQKYSIPIVMGGRDLMACAQTGSGKTGGFLFPILAQAFQNGPSPPPTAQAGGYGRQRKAYPTSLILAPTRELVS 300          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DBP1_CANGA (ATP-dependent RNA helicase DBP1 OS=Candida glabrata GN=DBP1 PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 4.156e-11
Identity = 33/100 (33.00%), Postives = 51/100 (51.00%), Query Frame = 2
Query:  158 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC-------------QTVDTSSREV--QALILSPTRELA 412
            EAIT F +  + + LL  +    F KP+ +Q+ ++  + K RD++A AQ+G+GKT      V               T  +  R+    AL+L+PTRELA
Sbjct:  135 EAITEFKSPPLDELLLENVELANFSKPTPVQKYSIPIVTKNRDLMACAQTGSGKTGGFLFPVLSELFLNGPAPLPEHTRHSYMRKCYPSALVLAPTRELA 234          

HSP 2 Score: 40.817 bits (94), Expect = 4.156e-11
Identity = 18/56 (32.14%), Postives = 32/56 (57.14%), Query Frame = 1
Query:  490 VGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQI 657
            +G+ +R ++ G +++  TP R+ D+++R  +    +K L LDE D ML      QI
Sbjct:  261 IGQQMRDMDRGCNLLVATPGRLNDLLERGKISLVNVKYLVLDEADRMLDMGFEPQI 316          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DBP8_GIBZE (ATP-dependent RNA helicase DBP8 OS=Gibberella zeae GN=DBP8 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.168e-11
Identity = 32/106 (30.19%), Postives = 59/106 (55.66%), Query Frame = 2
Query:  167 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            T+F A+ ++  L++ +     ++P+ IQ+  +  I+KGRD I  +++G+GKT   A+ + Q        + A++L+PTRELA    +   AI    +++A    GG
Sbjct:  116 TTFSALDVRPWLVQSLENMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTMAFAVPILQKWSEDPTAIFAVVLTPTRELALQIFEQFKAISSPQSLKAILVTGG 221          

HSP 2 Score: 27.335 bits (59), Expect = 4.168e-11
Identity = 14/41 (34.15%), Postives = 22/41 (53.66%), Query Frame = 1
Query:  526 HVVSGTPSRVCDMIKRKTLRT----RAIKLLALDEPDEMLS 636
            HV+  TP R+ D I+     T    R ++ + LDE D +L+
Sbjct:  236 HVIIATPGRLADHIRTSGEDTICGLRRVRYVVLDEADRLLN 276          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DDX49_MOUSE (Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus GN=Ddx49 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.184e-11
Identity = 30/107 (28.04%), Postives = 56/107 (52.34%), Query Frame = 2
Query:  164 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            +  F  +G+   L+    Q G ++P+ +Q   +  I++GRD +  A++G+GKT+   L + Q +      +  L+L+PTRELA    +    +G  + ++    VGG
Sbjct:    1 MAGFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGG 107          

HSP 2 Score: 30.8018 bits (68), Expect = 4.184e-11
Identity = 16/49 (32.65%), Postives = 25/49 (51.02%), Query Frame = 1
Query:  508 KLEHGVHVVSGTPSRVCDMIK-RKTLRTRAIKLLALDEPDEMLSRRLHD 651
            +L    HVV  TP R+ D ++   T   + I+ L +DE D +L +   D
Sbjct:  116 ELSRKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTD 164          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DRS1_SCHPO (ATP-dependent RNA helicase drs1 OS=Schizosaccharomyces pombe GN=drs1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.491e-11
Identity = 35/109 (32.11%), Postives = 60/109 (55.05%), Query Frame = 2
Query:  167 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV---QALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            +SF +M +   +L+G+   GFE P+ IQ + +   + G+D++  A +G+GKT+   + + + +    ++V   + LIL PTRELA     V   I  F +I    C+GG
Sbjct:  259 SSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGG 367          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DDX47_CAEEL (Putative ATP-dependent RNA helicase T26G10.1 OS=Caenorhabditis elegans GN=T26G10.1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.491e-11
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 2
Query:  170 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            SF  +G+   L     + G+ KPS IQQ A+   ++G+DVI  A++G+GKT   A+ V Q++    +    L+L+PTRELA    +   A+G  I + A   VGG
Sbjct:   45 SFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGG 149          
The following BLAST results are available for this feature:
BLAST of EY661501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 438
Match NameE-valueIdentityDescription
DDX3Y_PANTR3.194e-1141.07ATP-dependent RNA helicase DDX3Y OS=Pan troglodyte... [more]
DDX3Y_HUMAN3.194e-1141.07ATP-dependent RNA helicase DDX3Y OS=Homo sapiens G... [more]
DDX3Y_PONAB3.194e-1141.07ATP-dependent RNA helicase DDX3Y OS=Pongo abelii G... [more]
DDX54_DICDI3.439e-1134.75ATP-dependent RNA helicase ddx54 OS=Dictyostelium ... [more]
DED1_PHANO4.139e-1137.50ATP-dependent RNA helicase DED1 OS=Phaeosphaeria n... [more]
DBP1_CANGA4.156e-1133.00ATP-dependent RNA helicase DBP1 OS=Candida glabrat... [more]
DBP8_GIBZE4.168e-1130.19ATP-dependent RNA helicase DBP8 OS=Gibberella zeae... [more]
DDX49_MOUSE4.184e-1128.04Probable ATP-dependent RNA helicase DDX49 OS=Mus m... [more]
DRS1_SCHPO4.491e-1132.11ATP-dependent RNA helicase drs1 OS=Schizosaccharom... [more]
DDX47_CAEEL4.491e-1137.14Putative ATP-dependent RNA helicase T26G10.1 OS=Ca... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-H01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661501 ID=EY661501; Name=EY661501; organism=Citrus sinensis; type=EST; length=913bp
CTCACCTGGTTGACGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAAT
TGTTGCGAATTTCGTGCTAGATGGCGGCGGCGACGGCTATGCGGAGGAGA
GGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGGA
AGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGATC
TGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACAA
CAGAGGGCCGTTATGCCAATAATAAAGGGCCGTGATGTAATTGCACAGGC
CCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAGA
CGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTACG
AGGGAGTTGGCGACGCACACAGAGAAAGTGATTTTGGCAATTGGTGATTT
TATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAGTGTCGGGGAAGA
TATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGAGCA
GAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTAAA
TTATTGGCGCTTGATGAGCCCGATGAGATGCTGAGCAGACGGCTCCATGA
TCAAATTTATGATGGGGACCGTTATCTCCACCGGATCTTCAGGTGGTTTG
AGATCTGCCACCCTTCCTCCGGAATTTTGGAGATGACGACAAATTCCTGG
AAGATCCTGGAAAGATTCTTGGAAACGGGATGAAGTACTTTTGAAGGGAT
CAACCAATTTTTGCTGCAATGGAAAATAGGAGTGAAAATTGGTCCCCCGG
GGACTTTTGAAACCCTACCTTTCACAGGTTGTATTCTTGGACCCAAAGGA
AGGGGGTTGGTAA
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