EY661501

Overview
NameEY661501
Unique NameEY661501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DBP10_CANAL (ATP-dependent RNA helicase DBP10 OS=Candida albicans GN=DBP10 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.491e-11
Identity = 38/108 (35.19%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  170 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE---VQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            SF + G+   +L  I + G+++P+ IQ++ +  I++GRDV+  A++G+GKT+   L + + +   SR+   V+A+ILSP+RELA  T K +       N+Q+   +GG
Sbjct:  100 SFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIERL--KSRQPGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGG 205          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DDX3_XENLA (Putative ATP-dependent RNA helicase an3 OS=Xenopus laevis GN=an3 PE=2 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 5.372e-11
Identity = 23/56 (41.07%), Postives = 31/56 (55.36%), Query Frame = 1
Query:  490 VGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQI 657
            +G+ IR LE G H++  TP R+ DM++R  +     K L LDE D ML      QI
Sbjct:  347 IGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQI 402          

HSP 2 Score: 41.9726 bits (97), Expect = 5.372e-11
Identity = 28/101 (27.72%), Postives = 53/101 (52.48%), Query Frame = 2
Query:  164 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV-----DTSSREVQ-------------ALILSPTRELA 412
            I SF  + + + ++  I    + +P+ +Q+ A+  II+ RD++A AQ+G+GKT+   L +   +       + + +Q             +L+L+PTRELA
Sbjct:  220 IESFHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQIYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELA 320          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DBP1_YEAST (ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae GN=DBP1 PE=1 SV=2)

HSP 1 Score: 48.1358 bits (113), Expect = 5.390e-11
Identity = 31/101 (30.69%), Postives = 50/101 (49.50%), Query Frame = 2
Query:  158 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV---------------CQTVDTSSREVQALILSPTRELAT 415
            E I  F +  + + L+  I    F KP+ +Q+ ++  + KGRD++A AQ+G+GKT      +                Q+  +      AL+L+PTRELAT
Sbjct:  151 EPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELAT 251          

HSP 2 Score: 40.4318 bits (93), Expect = 5.390e-11
Identity = 19/56 (33.93%), Postives = 31/56 (55.36%), Query Frame = 1
Query:  490 VGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQI 657
            +G  +R+++ G  ++  TP R+ D+++R  +    IK L LDE D ML      QI
Sbjct:  277 IGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQI 332          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DBP1_YEAS7 (ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP1 PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 5.390e-11
Identity = 31/101 (30.69%), Postives = 50/101 (49.50%), Query Frame = 2
Query:  158 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV---------------CQTVDTSSREVQALILSPTRELAT 415
            E I  F +  + + L+  I    F KP+ +Q+ ++  + KGRD++A AQ+G+GKT      +                Q+  +      AL+L+PTRELAT
Sbjct:  151 EPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELAT 251          

HSP 2 Score: 40.4318 bits (93), Expect = 5.390e-11
Identity = 19/56 (33.93%), Postives = 31/56 (55.36%), Query Frame = 1
Query:  490 VGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQI 657
            +G  +R+++ G  ++  TP R+ D+++R  +    IK L LDE D ML      QI
Sbjct:  277 IGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQI 332          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DDX41_DROME (ATP-dependent RNA helicase abstrakt OS=Drosophila melanogaster GN=abs PE=1 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 5.390e-11
Identity = 30/98 (30.61%), Postives = 47/98 (47.96%), Query Frame = 2
Query:  164 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREV--------QALILSPTRELATHTEKVI 433
            I SF  M     +L G+   G + P+ IQ + +  ++ GRD+I  A +G+GKT +  L V          +          LI+ P+RELA  T ++I
Sbjct:  176 IRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEII 273          

HSP 2 Score: 41.2022 bits (95), Expect = 5.390e-11
Identity = 18/56 (32.14%), Postives = 29/56 (51.79%), Query Frame = 1
Query:  490 VGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQI 657
            V E +  +  GVH+V  TP R+ DM+ +K L     + L +DE D M+     + +
Sbjct:  299 VSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDV 354          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: PRP28_CANAL (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Candida albicans GN=PRP28 PE=3 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 5.400e-11
Identity = 34/109 (31.19%), Postives = 54/109 (49.54%), Query Frame = 2
Query:  188 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV----------DTSSREVQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            I D L+  I Q G+E+P+++Q+ ++   +K RDV+  A++G+GKT    + V   +          +  S E   LIL+PTRELA    K        +  Q    +GG
Sbjct:  175 INDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNEPVGLILAPTRELALQITKEAEKFCKKLGYQVLPIIGG 283          

HSP 2 Score: 35.039 bits (79), Expect = 5.400e-11
Identity = 17/47 (36.17%), Postives = 27/47 (57.45%), Query Frame = 1
Query:  496 EDIRKLEH-GVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEML 633
            + I K++  GVH++  TP R+ D I+RK +       L +DE D M+
Sbjct:  288 DTINKIDQTGVHLIVATPGRLVDSIERKIVDLSKCYCLVMDEADRMI 334          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: SPB4_ENCCU (ATP-dependent rRNA helicase SPB4 OS=Encephalitozoon cuniculi GN=SPB4 PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 5.437e-11
Identity = 32/109 (29.36%), Postives = 56/109 (51.38%), Query Frame = 2
Query:  185 GIKDDLLRG-----IYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV-DTSSR---EVQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            GI+D  + G     I + GF K + +Q + +  ++KG+DV+ Q+ +GTGKT      +   + D   R    V A++++PTRELA      I  +    +++    +GG
Sbjct:    5 GIEDVAMNGRLKKEIEENGFGKMTEVQLKCIPEVLKGKDVVVQSPTGTGKTMAFLAPILSCIYDGKGRGRPGVTAVVITPTRELALQ----IREVAGLFDVKCECFIGG 109          

HSP 2 Score: 37.3502 bits (85), Expect = 5.437e-11
Identity = 15/55 (27.27%), Postives = 32/55 (58.18%), Query Frame = 1
Query:  469 CVCWRQSVGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEML 633
            C     S+ ED ++++    +  GTP R+ +++ ++T +  ++  L LDE D++L
Sbjct:  105 CFIGGMSIEEDYKRMKEEFSIAVGTPGRLLEIVGKETKKFSSLSHLVLDEADKLL 159          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DRS1_PICGU (ATP-dependent RNA helicase DRS1 OS=Pichia guilliermondii GN=DRS1 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.865e-11
Identity = 40/120 (33.33%), Postives = 67/120 (55.83%), Query Frame = 2
Query:  137 FETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA---LILSPTRELATHTEKVILAIGDFI-NIQAHACVGG 484
            +E ++  E ITSF A+ +   LL+G+   G+  PSAIQ  ++   + G+D++A A +G+GKT+   + + + +      V A   ++L+PTRELA     V   +G F+ N+     VGG
Sbjct:  188 YEESKTTEKITSFQALQLSRPLLKGVGNLGYTVPSAIQAASIPIAMMGKDIVAGAVTGSGKTAAYLIPIIERLIYKPAAVSATRVIVLTPTRELAIQVCDVGKKLGQFVANLNFGLAVGG 307          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DDX4_PIG (Probable ATP-dependent RNA helicase DDX4 OS=Sus scrofa GN=DDX4 PE=2 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 6.964e-11
Identity = 30/92 (32.61%), Postives = 53/92 (57.61%), Query Frame = 2
Query:  161 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV----DTSSR-----EVQALILSPTREL 409
            AI +F+   +   L   I + G+ K + +Q+ ++  I+ GRD++A AQ+G+GKT+   L +   +     T+SR     E + +I++PTREL
Sbjct:  284 AILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTREL 375          

HSP 2 Score: 41.2022 bits (95), Expect = 6.964e-11
Identity = 18/48 (37.50%), Postives = 30/48 (62.50%), Query Frame = 1
Query:  490 VGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEML 633
            +G  IR++  G +++  TP R+ D+I ++ +  + IK L LDE D ML
Sbjct:  403 LGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRML 450          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DDX4_HUMAN (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=2 SV=2)

HSP 1 Score: 46.9802 bits (110), Expect = 6.964e-11
Identity = 30/92 (32.61%), Postives = 53/92 (57.61%), Query Frame = 2
Query:  161 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV----DTSSR-----EVQALILSPTREL 409
            AI +F+   +   L   I + G+ K + +Q+ ++  I+ GRD++A AQ+G+GKT+   L +   +     T+SR     E + +I++PTREL
Sbjct:  286 AILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTREL 377          

HSP 2 Score: 41.2022 bits (95), Expect = 6.964e-11
Identity = 18/48 (37.50%), Postives = 30/48 (62.50%), Query Frame = 1
Query:  490 VGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEML 633
            +G  IR++  G +++  TP R+ D+I ++ +  + IK L LDE D ML
Sbjct:  405 LGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRML 452          
The following BLAST results are available for this feature:
BLAST of EY661501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 438
Match NameE-valueIdentityDescription
DBP10_CANAL4.491e-1135.19ATP-dependent RNA helicase DBP10 OS=Candida albica... [more]
DDX3_XENLA5.372e-1141.07Putative ATP-dependent RNA helicase an3 OS=Xenopus... [more]
DBP1_YEAST5.390e-1130.69ATP-dependent RNA helicase DBP1 OS=Saccharomyces c... [more]
DBP1_YEAS75.390e-1130.69ATP-dependent RNA helicase DBP1 OS=Saccharomyces c... [more]
DDX41_DROME5.390e-1130.61ATP-dependent RNA helicase abstrakt OS=Drosophila ... [more]
PRP28_CANAL5.400e-1131.19Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
SPB4_ENCCU5.437e-1129.36ATP-dependent rRNA helicase SPB4 OS=Encephalitozoo... [more]
DRS1_PICGU5.865e-1133.33ATP-dependent RNA helicase DRS1 OS=Pichia guillier... [more]
DDX4_PIG6.964e-1132.61Probable ATP-dependent RNA helicase DDX4 OS=Sus sc... [more]
DDX4_HUMAN6.964e-1132.61Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-H01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661501 ID=EY661501; Name=EY661501; organism=Citrus sinensis; type=EST; length=913bp
CTCACCTGGTTGACGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAAT
TGTTGCGAATTTCGTGCTAGATGGCGGCGGCGACGGCTATGCGGAGGAGA
GGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGGA
AGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGATC
TGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACAA
CAGAGGGCCGTTATGCCAATAATAAAGGGCCGTGATGTAATTGCACAGGC
CCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAGA
CGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTACG
AGGGAGTTGGCGACGCACACAGAGAAAGTGATTTTGGCAATTGGTGATTT
TATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAGTGTCGGGGAAGA
TATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGAGCA
GAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTAAA
TTATTGGCGCTTGATGAGCCCGATGAGATGCTGAGCAGACGGCTCCATGA
TCAAATTTATGATGGGGACCGTTATCTCCACCGGATCTTCAGGTGGTTTG
AGATCTGCCACCCTTCCTCCGGAATTTTGGAGATGACGACAAATTCCTGG
AAGATCCTGGAAAGATTCTTGGAAACGGGATGAAGTACTTTTGAAGGGAT
CAACCAATTTTTGCTGCAATGGAAAATAGGAGTGAAAATTGGTCCCCCGG
GGACTTTTGAAACCCTACCTTTCACAGGTTGTATTCTTGGACCCAAAGGA
AGGGGGTTGGTAA
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