EY661501

Overview
NameEY661501
Unique NameEY661501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DED1_PICST (ATP-dependent RNA helicase DED1 OS=Pichia stipitis GN=DED1 PE=3 SV=3)

HSP 1 Score: 45.4394 bits (106), Expect = 6.986e-11
Identity = 33/101 (32.67%), Postives = 51/101 (50.50%), Query Frame = 2
Query:  158 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC-------------QTVDTSSREVQ--ALILSPTRELAT 415
            + ITSF A  + + L+  I    F KP+ +Q+ +V  +  GRD++A AQ+G+GKT      V               T   SS +V    L+++PTREL +
Sbjct:  165 DPITSFTAPPLDELLVENITMSRFTKPTPVQKYSVPIVAGGRDLMACAQTGSGKTGGFLFPVLSESYINGPAPIAESTGAFSSHKVHPTILVMAPTRELVS 265          

HSP 2 Score: 42.743 bits (99), Expect = 6.986e-11
Identity = 21/56 (37.50%), Postives = 31/56 (55.36%), Query Frame = 1
Query:  490 VGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQI 657
            +G+ IR L+ G  ++  TP R+ D+++R  +    IK L LDE D ML      QI
Sbjct:  291 IGQQIRNLDKGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQI 346          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DED1_SCHPO (ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces pombe GN=ded1 PE=1 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 6.990e-11
Identity = 31/103 (30.10%), Postives = 52/103 (50.49%), Query Frame = 2
Query:  155 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTS--------------MIALTVCQTVDTSSREVQA----LILSPTREL 409
            +E +  F +  +   LL+ I   G+ +P+ +Q+ ++  +  GRD++A AQ+G+GKT+                A+ V Q      R  +A    LIL+PTREL
Sbjct:  165 IEPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTREL 267          

HSP 2 Score: 42.3578 bits (98), Expect = 6.990e-11
Identity = 21/52 (40.38%), Postives = 29/52 (55.77%), Query Frame = 1
Query:  502 IRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQI 657
            IR+++ G  ++S TP R+ D+I R  +    IK L LDE D ML      QI
Sbjct:  299 IRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQI 350          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: RH11_ARATH (DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis thaliana GN=RH11 PE=2 SV=1)

HSP 1 Score: 44.2838 bits (103), Expect = 6.998e-11
Identity = 29/93 (31.18%), Postives = 50/93 (53.76%), Query Frame = 2
Query:  164 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV--------DTSSREVQ--ALILSPTRELA 412
            + +F  + + D L   I +  + +P+ +Q+ A+  ++  RD++A AQ+G+GKT+     +   +           SR V   A+ILSPTRELA
Sbjct:  150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELA 242          

HSP 2 Score: 43.8986 bits (102), Expect = 6.998e-11
Identity = 20/56 (35.71%), Postives = 33/56 (58.93%), Query Frame = 1
Query:  490 VGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQI 657
            + + +R+LE G  ++  TP R+ D+++R  +  + I+ LALDE D ML      QI
Sbjct:  269 IHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQI 324          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DBP10_PICGU (ATP-dependent RNA helicase DBP10 OS=Pichia guilliermondii GN=DBP10 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.660e-11
Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = 2
Query:  170 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE--VQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            SF + G+   LL+ I + GF++P+ IQ++ +  +++ RDV+  A++G+GKT+   L V + + + S +  V+A+ILSP+RELA  T K +       ++++   +GG
Sbjct:  100 SFASFGLSKFLLKNIAKKGFKQPTPIQRKTIPLVMESRDVVGMARTGSGKTAAFVLPVVEKLKSHSPKVGVRAVILSPSRELALQTFKQVKEFTKGTDLRSIVLIGG 206          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DBP10_GIBZE (ATP-dependent RNA helicase DBP10 OS=Gibberella zeae GN=DBP10 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.660e-11
Identity = 36/106 (33.96%), Postives = 64/106 (60.38%), Query Frame = 2
Query:  173 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE--VQALILSPTRELATHTEKVILAIGDFINIQAHACVGG 484
            F AMG+ ++LL+ I + GF  P+ IQ++A+  I+  +D++  A++G+GKT+   + + + +   S     +ALI+SP+RELA  T KV+       +++    VGG
Sbjct:   84 FQAMGLNNNLLKAITRKGFSVPTPIQRKAIPLILDRKDLVGMARTGSGKTAAFVIPMIEKLRAHSARFGTRALIMSPSRELAIQTLKVVKEFSRGTDLKCVLLVGG 189          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: PRP28_MAGGR (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Magnaporthe grisea GN=PRP28 PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 9.056e-11
Identity = 28/100 (28.00%), Postives = 52/100 (52.00%), Query Frame = 2
Query:  212 IYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVD--------TSSREVQALILSPTRELATHTEKVILAIGDFINIQAHACVGGK 487
            I Q G+ +P+ +Q+ A+   ++ RD+I  +++G+GKT+   L +   ++        T +    ALIL+PTRELAT  +  ++     +       +G K
Sbjct:  272 IKQVGYTEPTPVQRAAIPIALQCRDLIGISKTGSGKTAAFVLPMLSYIEPLPPLNEVTKTEGPYALILAPTRELATQIQAEVIKFATRMGFTVVCLIGNK 371          

HSP 2 Score: 37.7354 bits (86), Expect = 9.056e-11
Identity = 20/68 (29.41%), Postives = 33/68 (48.53%), Query Frame = 1
Query:  466 TCVCW---RQSVGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQIY 660
            T VC    ++++ ED   L +G  ++  TP R+ D ++R  L       + LDE D M+     D I+
Sbjct:  363 TVVCLIGNKRTIEEDAFALRNGAEIIVATPGRLVDCLERHLLVLSQCSYVVLDEADRMVDGGFEDSIH 430          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DED1_LODEL (ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus GN=DED1 PE=3 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 9.061e-11
Identity = 36/105 (34.29%), Postives = 53/105 (50.48%), Query Frame = 2
Query:  149 EGV-EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC-------------QTVDTSSREV--QALILSPTRELAT 415
            EGV E I SF A  + + L+  I    F KP+ +Q+ +V  +  GRD++A AQ+G+GKT      V               T   SS +V    L+++PTREL +
Sbjct:  168 EGVPEPINSFTAPPLDELLVENIKLSRFTKPTPVQKYSVPIVAAGRDLMACAQTGSGKTGGFLFPVLSESYMNGPAPIPESTGAFSSHKVYPTILVMAPTRELVS 272          

HSP 2 Score: 42.743 bits (99), Expect = 9.061e-11
Identity = 21/56 (37.50%), Postives = 31/56 (55.36%), Query Frame = 1
Query:  490 VGEDIRKLEHGVHVVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLSRRLHDQI 657
            +G  IR+L+ G  ++  TP R+ D+++R  +    IK L LDE D ML      QI
Sbjct:  298 IGNQIRQLDRGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQI 353          
BLAST of EY661501 vs. ExPASy Swiss-Prot
Match: DBP9_ASPFU (ATP-dependent RNA helicase dbp9 OS=Aspergillus fumigatus GN=dbp9 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.067e-11
Identity = 33/101 (32.67%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  167 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV------DTSSREVQALILSPTRELATHTEKVILAIGDF 451
            T F+++ +   L + + +  F KP+ +Q +A+   ++G+D++A+A++G+GKT+   L + QT+      D S +    LIL PTRELA   + VI+    F
Sbjct:   57 TDFESLNLDPRLRQALIKEQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATTGLILVPTRELAEQVQSVIIKFSAF 157          

HSP 2 Score: 21.557 bits (44), Expect = 9.067e-11
Identity = 11/36 (30.56%), Postives = 18/36 (50.00%), Query Frame = 1
Query:  529 VVSGTPSRVCDMIKRKTLRTRAIKLLALDEPDEMLS 636
            ++  TP+RV   +    L    +  L +DE D +LS
Sbjct:  186 LIVSTPARVIANLGTSALSLENLTHLVIDEADLVLS 221          
The following BLAST results are available for this feature:
BLAST of EY661501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 438
Match NameE-valueIdentityDescription
DED1_PICST6.986e-1132.67ATP-dependent RNA helicase DED1 OS=Pichia stipitis... [more]
DED1_SCHPO6.990e-1130.10ATP-dependent RNA helicase ded1 OS=Schizosaccharom... [more]
RH11_ARATH6.998e-1131.18DEAD-box ATP-dependent RNA helicase 11 OS=Arabidop... [more]
DBP10_PICGU7.660e-1133.64ATP-dependent RNA helicase DBP10 OS=Pichia guillie... [more]
DBP10_GIBZE7.660e-1133.96ATP-dependent RNA helicase DBP10 OS=Gibberella zea... [more]
PRP28_MAGGR9.056e-1128.00Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DED1_LODEL9.061e-1134.29ATP-dependent RNA helicase DED1 OS=Lodderomyces el... [more]
DBP9_ASPFU9.067e-1132.67ATP-dependent RNA helicase dbp9 OS=Aspergillus fum... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-H01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661501 ID=EY661501; Name=EY661501; organism=Citrus sinensis; type=EST; length=913bp
CTCACCTGGTTGACGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAAT
TGTTGCGAATTTCGTGCTAGATGGCGGCGGCGACGGCTATGCGGAGGAGA
GGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGGA
AGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGATC
TGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACAA
CAGAGGGCCGTTATGCCAATAATAAAGGGCCGTGATGTAATTGCACAGGC
CCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAGA
CGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTACG
AGGGAGTTGGCGACGCACACAGAGAAAGTGATTTTGGCAATTGGTGATTT
TATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAGTGTCGGGGAAGA
TATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGAGCA
GAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTAAA
TTATTGGCGCTTGATGAGCCCGATGAGATGCTGAGCAGACGGCTCCATGA
TCAAATTTATGATGGGGACCGTTATCTCCACCGGATCTTCAGGTGGTTTG
AGATCTGCCACCCTTCCTCCGGAATTTTGGAGATGACGACAAATTCCTGG
AAGATCCTGGAAAGATTCTTGGAAACGGGATGAAGTACTTTTGAAGGGAT
CAACCAATTTTTGCTGCAATGGAAAATAGGAGTGAAAATTGGTCCCCCGG
GGACTTTTGAAACCCTACCTTTCACAGGTTGTATTCTTGGACCCAAAGGA
AGGGGGTTGGTAA
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