EY661498

Overview
NameEY661498
Unique NameEY661498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DEAD_MYCTU (Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis GN=deaD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.390e-22
Identity = 71/232 (30.60%), Postives = 119/232 (51.29%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK-IERESGVKFEHISAPQPADIAKAAGVEAAETITQ-VSDSVIPAFKSAAEE 686
            Q  LFSAT+P  ++ +S K+L  D   +       +  + +  +I +     A ++V+   +  + +    I+F  TK++  ++A+ L      A A+ GD+ Q+QRE T+   R G    LVAT+VAARGLD+  +  ++  + P D E+Y+HR GRTGRAG +G A++   PR+  + K IE+ +         P   D+      + A++IT  +    I  F+   EE
Sbjct:  189 QVALFSATMPPAIRKLSAKYLH-DPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLE--VEPFEA---MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEE 414          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DDX17_MOUSE (Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.390e-22
Identity = 66/176 (37.50%), Postives = 96/176 (54.55%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR--CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 518
            QTL++SAT P  V+ ++  FL+ D   I+ VGN ++ A+ N+  IV  C  S +   +  ++         +TIIF ETK     L   +      A  +HGD  Q +R+  L  FRSGK   L+AT+VA+RGLD+ DV+ +I  + P   E Y+HR GRT R+ N G A   + P
Sbjct:  272 QTLMWSATWPKEVRQLAEDFLR-DYTQIN-VGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP 445          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DDX17_HUMAN (Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.390e-22
Identity = 66/176 (37.50%), Postives = 96/176 (54.55%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIR--CYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP 518
            QTL++SAT P  V+ ++  FL+ D   I+ VGN ++ A+ N+  IV  C  S +   +  ++         +TIIF ETK     L   +      A  +HGD  Q +R+  L  FRSGK   L+AT+VA+RGLD+ DV+ +I  + P   E Y+HR GRT R+ N G A   + P
Sbjct:  272 QTLMWSATWPKEVRQLAEDFLR-DYTQIN-VGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTP 445          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DBP3_YEAST (ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae GN=DBP3 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.390e-22
Identity = 64/186 (34.41%), Postives = 106/186 (56.99%), Query Frame = 3
Query:    3 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR----TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 536
            K QTL+F+AT P  V+ +++ F+ +  K + +   +++ A+  +  IV       + + + ++++ Y SG +     +IF   K+ A+++   L        A+HGD+ Q QR   L  F+SGK   L+AT+VAARGLDI +V+ +I    P  VE Y+HR GRTGRAG TG A  L+  ++  ++
Sbjct:  287 KRQTLMFTATWPKEVRELASTFMNNPIK-VSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLA 471          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DBP3_COCIM (ATP-dependent RNA helicase DBP3 OS=Coccidioides immitis GN=DBP3 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.390e-22
Identity = 61/186 (32.80%), Postives = 106/186 (56.99%), Query Frame = 3
Query:    3 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG----RTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 536
            K QT++F+AT P  V++++  F K+   T+ +  +  ++A+  ++ +V       +   + +++R Y  GG    R ++F   K+ A ++   +         +HGD+ Q++R  +L  F+SG    LVAT+VAARGLDI  V+L++    P  +E Y+HR GRTGRAG  G+A+ L+  R  ++S
Sbjct:  278 KRQTIMFTATWPIGVRNLAASFTKNPV-TVTIGDSSDIRANKRIKQMVEVLQPYEKDSRLLELLRRYQDGGKNNHRILVFCLYKKEAMRVERFIGSKGFKVAGIHGDMSQTERFRSLEAFKSGSISLLVATDVAARGLDIPAVKLVLNVTFPLTIEDYVHRIGRTGRAGAEGLAITLFTERDKALS 462          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DBP3_ASHGO (ATP-dependent RNA helicase DBP3 OS=Ashbya gossypii GN=DBP3 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.390e-22
Identity = 62/184 (33.70%), Postives = 107/184 (58.15%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR----TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 536
            QTL+F+AT P  V+ +++ F+++  K + +   +++ A+  +  +V       + + + ++++ Y SG +     +IF   K+ AS++   L        A+HGD+ Q QR   L+ F++G    L+AT+VAARGLDI +V+ +I    P  VE Y+HR GRTGRAG TGVA  L+  ++  ++
Sbjct:  301 QTLMFTATWPKEVRELASTFMRAPVK-VSIGNRDELSANKRITQVVEVIDPFKKEKRLLELLKQYQSGAKKNDKVLIFALYKKEASRVERNLKYNGYNVAAIHGDLSQQQRTQALSEFKAGTANLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGATGVAHTLFTEQEKHLA 483          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DBP2_ENCCU (ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi GN=DBP2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.390e-22
Identity = 63/165 (38.18%), Postives = 96/165 (58.18%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNT 491
            QTL++SAT P  V+ ++  ++    + +  VGNE++K ++ ++ IV  CS   +   +  ++  +  G + I+F   K +   L  +L     GA ALHGD  Q+ R+  L  FRSG+   L+AT VA RGLD+NDV+L+I  + P   E Y+HR GRT R GNT
Sbjct:  267 QTLMWSATWPREVRGLAESYMNEYIQVV--VGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDNFK-GDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTAR-GNT 427          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: PRP28_MAGGR (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Magnaporthe grisea GN=PRP28 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.121e-22
Identity = 67/180 (37.22%), Postives = 90/180 (50.00%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKK-TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 533
            QT+++SAT+P  V+ I+  +LK     TI  +G            +V   S   R   +  ++  Y +G   I+F  TK +   +A  L      A  LHG+  Q QRE  L  FR G+   LVAT+VAARGLDI DV L+I       +E Y HR GRTGRAG  G+A+    P    V
Sbjct:  466 QTVMYSATMPPSVERIAKNYLKHPAMVTIGTIGEAVDTVEQQAMWVV---SEDERRNKLRAMLNTYGTGKLVIVFVNTKSNCDAVAKDLKSSSFSAVTLHGNKTQDQREAALQSFRDGRTNVLVATDVAARGLDIPDVSLVINFNMAGTIEVYTHRIGRTGRAGKEGMAITFCGPEDHGV 642          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DDX43_HUMAN (Probable ATP-dependent RNA helicase DDX43 OS=Homo sapiens GN=DDX43 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.121e-22
Identity = 61/169 (36.09%), Postives = 99/169 (58.58%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLA-DLLPG---ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV 503
            QT++ SAT P  V  ++  +LK  +  I  VG   + A ++V+  ++  +   +   +   ++  SS  + I+F   K  A  L+ DL+ G     +LHGD +Q  RE  L  F++GK   L+AT++A+RGLD++DV  +   + PR++E Y+HR GRTGRAG TGV++
Sbjct:  422 QTVMTSATWPHSVHRLAQSYLK--EPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSI 588          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DBP3_YEAS7 (ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP3 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.121e-22
Identity = 64/186 (34.41%), Postives = 106/186 (56.99%), Query Frame = 3
Query:    3 KVQTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR----TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 536
            K QTL+F+AT P  V+ +++ F+ +  K + +   +++ A+  +  IV       + + + ++++ Y SG +     +IF   K+ A+++   L        A+HGD+ Q QR   L  F+SGK   L+AT+VAARGLDI +V+ +I    P  VE Y+HR GRTGRAG TG A  L+  ++  ++
Sbjct:  287 KRQTLMFTATWPKEVRELASTFMNNPIK-VSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNIAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLA 471          
The following BLAST results are available for this feature:
BLAST of EY661498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DEAD_MYCTU2.390e-2230.60Cold-shock DEAD box protein A homolog OS=Mycobacte... [more]
DDX17_MOUSE2.390e-2237.50Probable ATP-dependent RNA helicase DDX17 OS=Mus m... [more]
DDX17_HUMAN2.390e-2237.50Probable ATP-dependent RNA helicase DDX17 OS=Homo ... [more]
DBP3_YEAST2.390e-2234.41ATP-dependent RNA helicase DBP3 OS=Saccharomyces c... [more]
DBP3_COCIM2.390e-2232.80ATP-dependent RNA helicase DBP3 OS=Coccidioides im... [more]
DBP3_ASHGO2.390e-2233.70ATP-dependent RNA helicase DBP3 OS=Ashbya gossypii... [more]
DBP2_ENCCU2.390e-2238.18ATP-dependent RNA helicase DBP2 OS=Encephalitozoon... [more]
PRP28_MAGGR3.121e-2237.22Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DDX43_HUMAN3.121e-2236.09Probable ATP-dependent RNA helicase DDX43 OS=Homo ... [more]
DBP3_YEAS73.121e-2234.41ATP-dependent RNA helicase DBP3 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-G10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661498 ID=EY661498; Name=EY661498; organism=Citrus sinensis; type=EST; length=882bp
ATAAAGTTCAAACACTTCTCTTCAGTGCCACCTTGCCAAGCTGGGTGAAG
CATATTTCCACCAAGTTTCTTAAATCAGACAAGAAAACCATAGATCTTGT
TGGCAATGAGAAAATGAAGGCTAGTACCAATGTCCGGCATATTGTTCTTC
CTTGTTCTAGTTCAGCGAGATCTCAAGTCATTCCTGATATCATTCGTTGT
TATAGCAGTGGAGGCCGAACTATTATTTTCACCGAGACAAAGGAAAGTGC
TTCTCAGCTTGCTGACTTGCTGCCTGGTGCACGGGCTTTACATGGGGACA
TACAGCAGTCTCAACGTGAGGTGACACTTGCTGGGTTCAGGTCAGGAAAG
TTCATGACATTAGTTGCCACAAATGTGGCGGCACGGGGTTTGGACATTAA
TGATGTGCAGTTAATTATTCAGTGTGAGCCTCCTCGTGATGTAGAAGCCT
ATATACATCGATCTGGACGTACTGGAAGAGCAGGCAATACTGGAGTTGCT
GTAATGCTTTATGATCCTAGAAAGTCAAGTGTATCTAAGATAGAAAGAGA
ATCTGGTGTGAAATTTGAGCACATATCTGCTCCACAGCCAGCTGATATTG
CCAAGGCTGCAGGTGTGGAAGCTGCTGAAACAATAACCCAAGTTTCTGAT
AGTGTAATTCCCGCTTTCAAGTCCGCTGCTGAGGAGCTGTTGAATAATTC
TGGTCTATCAGCAGCAGAGCTGCTTGCAAAAGCACTAGCCAAGGCTGTAG
GTTATACTGAGATAAAGAGTAGATCACTTCTTAGTTCTTTGGAGGATCAT
GNTACAGTGGTTCTTGAAAGCAGAAGCCCATCTACCACCATCCTTTGCTT
TTTGTGTCTGAGAGATTCTTGCCCTGAGAAAA
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