EY661498

Overview
NameEY661498
Unique NameEY661498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: PRP28_NEUCR (Pre-mRNA-splicing ATP-dependent RNA helicase prp-28 OS=Neurospora crassa GN=prp-28 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.076e-22
Identity = 67/198 (33.84%), Postives = 104/198 (52.53%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV---------MLYDPR----KSSVSKIERE 551
            QT++++AT+P  V+ I+ K+L+  +  I  +GN      T  + +        R + + +I+         I+F   K +   +A  + G    A  LHG   Q QRE  LA  R+G+   LVAT++A RG+D+ DV L++      ++E+Y HR GRTGRAG +GVA+         +LYD R    KSS+SK+  E
Sbjct:  501 QTMMYTATMPPIVERIAKKYLR--RPAIVTIGNAGEAVDTVEQRVEFVSGEDKRKKRLQEILNSGQFKPPIIVFVNIKRNCDMVARDIKGMGYSAVTLHGSKTQEQREAALASLRNGQTDILVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGPEDNDVLYDLRQIISKSSISKVPDE 696          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: PRP28_CHAGB (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Chaetomium globosum GN=PRP28 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.076e-22
Identity = 65/198 (32.83%), Postives = 103/198 (52.02%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAV---------MLYDPR----KSSVSKIERE 551
            QT++++AT+P  V+ I+ K+L+  +  I  +GN      T  + +        R + + +I+         I+F   K +   +A  +         LHG   Q QRE +LA  R+G+   LVAT++A RG+D+ DV L++    P  +EAY HR GRTGRAG +GVA+         ++YD +    KSS+SK+  E
Sbjct:  477 QTMMYTATMPPLVEKIAKKYLR--RPAIVTIGNAGEAVDTVEQRVEFVSGEDKRKRRLQEILNSGQFKPPVIVFVNIKRNCEMVAKDIKSWGYSTVTLHGSKTQEQREASLASVRNGQANILVATDLAGRGIDVADVSLVVNFNMPSSIEAYTHRIGRTGRAGKSGVAITFLGNEDSDVMYDLKQIISKSSISKVPEE 672          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DBP3_SCLS1 (ATP-dependent RNA helicase dbp3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp3 PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.076e-22
Identity = 71/185 (38.38%), Postives = 102/185 (55.14%), Query Frame = 3
Query:    3 KVQTLLFSATLPSWVKHISTKFLKS-------DKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG----RTIIFTETKESASQLADLL--PGARA--LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 512
            K QTL+F+AT P  V+ +++ F+ S       D  T DL  N ++     V   V P     R   +  +++ Y SG     R ++F   K+ A+++   +   G R   +HGD+ Q QR  +L  F+SG    LVAT+VAARGLDI  V+L+I C  P  VE Y+HR GRTGRAG  G+A+ L+
Sbjct:  358 KRQTLMFTATWPESVRELASTFMTSPVKIAIGDNPTGDLRANSRIVQKVEV---VEPRDKEYR---LMQLLKQYQSGSQKDDRILVFCLYKKEATRVEGFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLF 536          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DBP3_PICGU (ATP-dependent RNA helicase DBP3 OS=Pichia guilliermondii GN=DBP3 PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.076e-22
Identity = 60/180 (33.33%), Postives = 100/180 (55.56%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 536
            QTL+F+AT P  V+ ++  F+    K + +   +++ A+  +   V       + + +  ++R Y S  + ++F   K+ A+++  +L        A+HGD+ Q QR   L  F+ G    L+AT+VAARGLDI +V+++I    P  VE Y+HR GRTGRAG TG+A  L+   +  +S
Sbjct:  304 QTLMFTATWPKEVRELAATFMNKAVK-VSIGNRDELAANKRITQTVEVMDPRDKERRLLQLLRQYGSDQKILVFALYKKEATRVEAMLRRSGFNVAAIHGDLSQQQRTSALDSFKRGDSNLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGIAHTLFTEHEKHLS 482          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DBP3_BOTFB (ATP-dependent RNA helicase dbp3 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp3 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.076e-22
Identity = 71/185 (38.38%), Postives = 101/185 (54.59%), Query Frame = 3
Query:    3 KVQTLLFSATLPSWVKHISTKFLKS-------DKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG----RTIIFTETKESASQLADLL--PGARA--LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLY 512
            K QTL+F+AT P  V+ ++  F+ S       D  T DL  N ++     V   V P     R   +  +++ Y SG     R ++F   K+ A+++   +   G R   +HGD+ Q QR  +L  F+SG    LVAT+VAARGLDI  V+L+I C  P  VE Y+HR GRTGRAG  G+A+ L+
Sbjct:  354 KRQTLMFTATWPESVRELAATFMTSPVKIAIGDNPTGDLRANSRIVQKVEV---VEPRDKEYR---LMQLLKQYQSGSQKDDRILVFCLYKKEATRVESFIRQKGFRVAGIHGDLSQEQRTRSLEAFKSGNTPVLVATDVAARGLDIPAVKLVINCTFPLTVEDYVHRIGRTGRAGKDGLAITLF 532          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: PRP5_GIBZE (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Gibberella zeae GN=PRP5 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.324e-22
Identity = 67/193 (34.72%), Postives = 106/193 (54.92%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYS--SGGRTIIFTETKESASQLAD--LLPG--ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS----VSKIERESG 557
            QT+LFSAT+P  +  ++ K LK+  +    VG   + A    + + +    S   +V+  +   Y      RT+IF E +E A  L    ++ G    ++HG   Q  R+ T++ F+ G    L+AT+VAARGLD+  ++L+I  + P  +E Y+HR+GRTGRAGNTGVAV    P + +    ++K   +SG
Sbjct:  780 QTILFSATMPRIIDSLTKKVLKNPIEVT--VGGRSVVAKEIEQIVEVRDEPSKFHRVLELLGELYDRDEDARTLIFVERQEKADDLLKELMMKGYPCMSIHGGKDQIDRDSTISDFKKGVVPILIATSVAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGRAGNTGVAVTFVTPEQENCAPGIAKALEQSG 970          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: PRP11_SCHPO (Pre-mRNA-processing ATP-dependent RNA helicase prp11 OS=Schizosaccharomyces pombe GN=prp11 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.953e-22
Identity = 64/179 (35.75%), Postives = 108/179 (60.34%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDL-VGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSS--GGRTIIFTETKESASQL-ADLLPG---ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK 524
            QT+LFSAT P  ++ ++ K LK   K +++ VG   + AS   + + +    S  S+++  +   Y++    RT++F + +ESA  L +DL+     + ++HG   Q  R+ T++ +++G F  L+AT+V ARGLD+  +QL++  + P  +E Y+HR GRTGRAG+TGVAV    P +
Sbjct:  601 QTVLFSATFPRAMEALARKVLK---KPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQ 776          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DBP2_KLULA (ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.081e-22
Identity = 65/192 (33.85%), Postives = 105/192 (54.69%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG--GRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS----KIERES 554
            QTL++SAT P  VK +++ +L    +    +G+ ++ AS  +  IV   +   +   +   +   S     + IIF  TK +  ++   L      A A+HGD  Q++R+  LA FRSG+   +VAT+VAARG+D+  +  +I  + P ++E Y+HR GRTGRAG+TG A+  +     S+     KI RE+
Sbjct:  293 QTLMWSATWPKEVKQLASDYLHDPIQV--QIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGSTGTAISFFTEGNKSLGAALIKIMREA 482          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: PRP28_GIBZE (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Gibberella zeae GN=PRP28 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.186e-21
Identity = 63/198 (31.82%), Postives = 99/198 (50.00%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPR-------------KSSVSKIERE 551
            QT++++AT+P  V+ I+ K+L+  +  I  +GN      T  + +        R + + +I+   + G   I+F   K +   +A  +      A  LHG   Q QRE  L   R+G    LVAT++A RG+D+ DV L++      ++E+Y HR GRTGRAG +GVA+    P              KSS+SK+  E
Sbjct:  496 QTMMYTATMPPLVERIAKKYLR--RPAIVTIGNAGEAVDTVEQRVEFVSGEDRRKKRLQEILSSGNFGPPIIVFVNIKRNCDAVARDIKQMGWSAVTLHGSKTQEQREAALGSVRAGHTQVLVATDLAGRGIDVPDVSLVVNFNMATNIESYTHRIGRTGRAGKSGVAITFLGPEDHETMYDLKQILSKSSISKVPEE 691          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DDX46_DICDI (ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.186e-21
Identity = 61/193 (31.61%), Postives = 107/193 (55.44%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRK----SSVSKIERESGVK 563
            QT++FSAT P  V++++ K L    K ++++   +   S+++   V    +  R + + +++  +   G+ +IFT  +E+   L   L  ++    +LHG   Q+ R+ T++ F++     L+AT +A+RGLDI D+ L++  + P  +E Y+HR GRTGRAGN G A     P +    SS+ K   +SG K
Sbjct:  692 QTIMFSATFPPKVENVAKKILN---KPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKALEQSGSK 881          
The following BLAST results are available for this feature:
BLAST of EY661498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PRP28_NEUCR4.076e-2233.84Pre-mRNA-splicing ATP-dependent RNA helicase prp-2... [more]
PRP28_CHAGB4.076e-2232.83Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DBP3_SCLS14.076e-2238.38ATP-dependent RNA helicase dbp3 OS=Sclerotinia scl... [more]
DBP3_PICGU4.076e-2233.33ATP-dependent RNA helicase DBP3 OS=Pichia guillier... [more]
DBP3_BOTFB4.076e-2238.38ATP-dependent RNA helicase dbp3 OS=Botryotinia fuc... [more]
PRP5_GIBZE5.324e-2234.72Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP11_SCHPO6.953e-2235.75Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DBP2_KLULA9.081e-2233.85ATP-dependent RNA helicase DBP2 OS=Kluyveromyces l... [more]
PRP28_GIBZE1.186e-2131.82Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
DDX46_DICDI1.186e-2131.61ATP-dependent RNA helicase ddx46 OS=Dictyostelium ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-G10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661498 ID=EY661498; Name=EY661498; organism=Citrus sinensis; type=EST; length=882bp
ATAAAGTTCAAACACTTCTCTTCAGTGCCACCTTGCCAAGCTGGGTGAAG
CATATTTCCACCAAGTTTCTTAAATCAGACAAGAAAACCATAGATCTTGT
TGGCAATGAGAAAATGAAGGCTAGTACCAATGTCCGGCATATTGTTCTTC
CTTGTTCTAGTTCAGCGAGATCTCAAGTCATTCCTGATATCATTCGTTGT
TATAGCAGTGGAGGCCGAACTATTATTTTCACCGAGACAAAGGAAAGTGC
TTCTCAGCTTGCTGACTTGCTGCCTGGTGCACGGGCTTTACATGGGGACA
TACAGCAGTCTCAACGTGAGGTGACACTTGCTGGGTTCAGGTCAGGAAAG
TTCATGACATTAGTTGCCACAAATGTGGCGGCACGGGGTTTGGACATTAA
TGATGTGCAGTTAATTATTCAGTGTGAGCCTCCTCGTGATGTAGAAGCCT
ATATACATCGATCTGGACGTACTGGAAGAGCAGGCAATACTGGAGTTGCT
GTAATGCTTTATGATCCTAGAAAGTCAAGTGTATCTAAGATAGAAAGAGA
ATCTGGTGTGAAATTTGAGCACATATCTGCTCCACAGCCAGCTGATATTG
CCAAGGCTGCAGGTGTGGAAGCTGCTGAAACAATAACCCAAGTTTCTGAT
AGTGTAATTCCCGCTTTCAAGTCCGCTGCTGAGGAGCTGTTGAATAATTC
TGGTCTATCAGCAGCAGAGCTGCTTGCAAAAGCACTAGCCAAGGCTGTAG
GTTATACTGAGATAAAGAGTAGATCACTTCTTAGTTCTTTGGAGGATCAT
GNTACAGTGGTTCTTGAAAGCAGAAGCCCATCTACCACCATCCTTTGCTT
TTTGTGTCTGAGAGATTCTTGCCCTGAGAAAA
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