EY661498

Overview
NameEY661498
Unique NameEY661498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.937e-26
Identity = 72/193 (37.31%), Postives = 109/193 (56.48%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK----IERESGVK 563
            QTL +SAT P  V+ +S KFL +  K I  +G+  +KA+  +R IV   S S +   +  ++     G R ++F +TK+   Q+   L      A ++HGD  Q++R+  L+ FRSGK   + AT+VAARGLD+ DV+ +I  + P  +E Y+HR GRTGRAG  G A   +    +  +K    I +E+G K
Sbjct:  279 QTLYWSATWPKEVEQLSKKFLYNPYKVI--IGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQK 469          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DDX4_XENLA (Probable ATP-dependent RNA helicase DDX4 OS=Xenopus laevis GN=ddx4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.937e-26
Identity = 71/183 (38.80%), Postives = 108/183 (59.02%), Query Frame = 3
Query:    3 KVQTLLFSATLPSWVKHISTKFLKSDKK--TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 533
            K QTL+FSAT P  ++ +++ +LKS+     + LVG     A ++V   VL    + + + + +I++  S   RT+IF  TK+ A  +A  L      + ++HGD +Q QRE  L  FR+GK   +V T VAARGLDI +VQ +I  + P++V+ Y+HR GRTGR GNTG A   ++ +   V
Sbjct:  460 KRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGG----ACSDVAQTVLEMRENGKMEKLLEILKS-SEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFFNVQDDHV 637          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DDX4_MACFA (Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis GN=DDX4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.937e-26
Identity = 68/173 (39.31%), Postives = 104/173 (60.12%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 515
            QTL+FSAT P  ++ ++ +FLKS+   + +   +   A  +V+  VL     ++ + + +I+R      RT++F ETK+ A  +A  L   +    ++HGD +Q +RE  L  FR GK   LVAT+VAARGLDI +VQ +I  + P  ++ Y+HR GRTGR GNTG A+  +D
Sbjct:  477 QTLMFSATFPEEIQRLAAEFLKSNYLFVAV--GQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 646          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DED1_ASPCL (ATP-dependent RNA helicase ded1 OS=Aspergillus clavatus GN=ded1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.037e-25
Identity = 70/174 (40.23%), Postives = 100/174 (57.47%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDK-KTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 515
            QTL+FSAT P  ++ ++  FLK     ++  VG+     +  V ++        +  V+ DI+  + + G T+IF ETK  A  L+D L   R    A+HGD  Q +RE  L  FRS +   LVAT VAARGLDI +V  +I  + P D++ Y+HR GRTGRAGNTG+A   ++
Sbjct:  387 QTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEYV----EDVDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLINQRFPATAIHGDRTQRERERALEMFRSARCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFN 556          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DDX4_HUMAN (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.037e-25
Identity = 68/173 (39.31%), Postives = 104/173 (60.12%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 515
            QTL+FSAT P  ++ ++ +FLKS+   + +   +   A  +V+  VL     ++ + + +I+R      RT++F ETK+ A  +A  L   +    ++HGD +Q +RE  L  FR GK   LVAT+VAARGLDI +VQ +I  + P  ++ Y+HR GRTGR GNTG A+  +D
Sbjct:  476 QTLMFSATFPEEIQRLAAEFLKSNYLFVAV--GQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 645          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DED1_SCHPO (ATP-dependent RNA helicase ded1 OS=Schizosaccharomyces pombe GN=ded1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.354e-25
Identity = 72/182 (39.56%), Postives = 102/182 (56.04%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDK-KTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 539
            QTL+FSAT P  ++ ++  FLK     ++  VG+     S N+   V+    S +   + DI+      G T+IF ETK  A  L D L      A ++HGD  Q +RE  L  FRSG+   +VAT VA+RGLDI +V  +I  + P D++ Y+HR GRTGRAGNTG AV  ++     ++K
Sbjct:  366 QTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGS----TSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAK 543          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DDX4_BOVIN (Probable ATP-dependent RNA helicase DDX4 OS=Bos taurus GN=DDX4 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.354e-25
Identity = 68/178 (38.20%), Postives = 105/178 (58.99%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 530
            QTL+FSAT P  ++ ++ +FLKS+   + +   +   A  +V+  +L     ++ + + +I+R      RT++F ETK+ A  +A  L   +    ++HGD +Q +RE  L  FR GK   LVAT+VAARGLDI +VQ +I  + P  ++ Y+HR GRTGR GNTG A+  +D    S
Sbjct:  478 QTLMFSATFPEEIQRLAGEFLKSNYLFVAV--GQVGGACRDVQQTILQVGQYSKREKLVEILRNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDS 652          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DDX4_MOUSE (Probable ATP-dependent RNA helicase DDX4 OS=Mus musculus GN=Ddx4 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.309e-25
Identity = 68/173 (39.31%), Postives = 102/173 (58.96%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYD 515
            QTLLFSAT P  ++ ++  FLKS    + +   +   A  +V+  +L     ++ + + +I+R      RT++F ETK+ A  +A  L   +    ++HGD +Q +RE  L  FR GK   LVAT+VAARGLDI +VQ +I  + P  ++ Y+HR GRTGR GNTG A+  +D
Sbjct:  449 QTLLFSATFPEEIQRLAGDFLKSSYLFVAV--GQVGGACRDVQQTILQVGQYSKREKLVEILRNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 618          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: CSHA_BACHK (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis subsp. konkukian GN=cshA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.309e-25
Identity = 75/237 (31.65%), Postives = 123/237 (51.90%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNNS 701
            QTLLFSAT+P  ++ I+ +F+   +    +    K     N++   L      +  V+  ++   S     I+F  TK    +L++ L      A  +HGD+ Q++R   L  F+ G    LVAT+VAARGLDI+ V  +   + P+D E+Y+HR GRTGRAG  G+A++   PR+S  +  IER +  K + + AP   +  +      AE + + + +  +  +K  AEE+L  +
Sbjct:  177 QTLLFSATMPDPIRRIAERFMTEPQH---IKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEN 409          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: CSHA_BACCZ (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ZK / E33L) GN=cshA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.309e-25
Identity = 75/237 (31.65%), Postives = 123/237 (51.90%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKS-SVSKIERESGVKFEHISAPQPADIAKAAGVEAAETI-TQVSDSVIPAFKSAAEELLNNS 701
            QTLLFSAT+P  ++ I+ +F+   +    +    K     N++   L      +  V+  ++   S     I+F  TK    +L++ L      A  +HGD+ Q++R   L  F+ G    LVAT+VAARGLDI+ V  +   + P+D E+Y+HR GRTGRAG  G+A++   PR+S  +  IER +  K + + AP   +  +      AE + + + +  +  +K  AEE+L  +
Sbjct:  177 QTLLFSATMPDPIRRIAERFMTEPQH---IKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLLDIQSPE-LAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAYYKRIAEEMLEEN 409          
The following BLAST results are available for this feature:
BLAST of EY661498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH20_ARATH7.937e-2637.31DEAD-box ATP-dependent RNA helicase 20 OS=Arabidop... [more]
DDX4_XENLA7.937e-2638.80Probable ATP-dependent RNA helicase DDX4 OS=Xenopu... [more]
DDX4_MACFA7.937e-2639.31Probable ATP-dependent RNA helicase DDX4 OS=Macaca... [more]
DED1_ASPCL1.037e-2540.23ATP-dependent RNA helicase ded1 OS=Aspergillus cla... [more]
DDX4_HUMAN1.037e-2539.31Probable ATP-dependent RNA helicase DDX4 OS=Homo s... [more]
DED1_SCHPO1.354e-2539.56ATP-dependent RNA helicase ded1 OS=Schizosaccharom... [more]
DDX4_BOVIN1.354e-2538.20Probable ATP-dependent RNA helicase DDX4 OS=Bos ta... [more]
DDX4_MOUSE2.309e-2539.31Probable ATP-dependent RNA helicase DDX4 OS=Mus mu... [more]
CSHA_BACHK2.309e-2531.65DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCZ2.309e-2531.65DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-G10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661498 ID=EY661498; Name=EY661498; organism=Citrus sinensis; type=EST; length=882bp
ATAAAGTTCAAACACTTCTCTTCAGTGCCACCTTGCCAAGCTGGGTGAAG
CATATTTCCACCAAGTTTCTTAAATCAGACAAGAAAACCATAGATCTTGT
TGGCAATGAGAAAATGAAGGCTAGTACCAATGTCCGGCATATTGTTCTTC
CTTGTTCTAGTTCAGCGAGATCTCAAGTCATTCCTGATATCATTCGTTGT
TATAGCAGTGGAGGCCGAACTATTATTTTCACCGAGACAAAGGAAAGTGC
TTCTCAGCTTGCTGACTTGCTGCCTGGTGCACGGGCTTTACATGGGGACA
TACAGCAGTCTCAACGTGAGGTGACACTTGCTGGGTTCAGGTCAGGAAAG
TTCATGACATTAGTTGCCACAAATGTGGCGGCACGGGGTTTGGACATTAA
TGATGTGCAGTTAATTATTCAGTGTGAGCCTCCTCGTGATGTAGAAGCCT
ATATACATCGATCTGGACGTACTGGAAGAGCAGGCAATACTGGAGTTGCT
GTAATGCTTTATGATCCTAGAAAGTCAAGTGTATCTAAGATAGAAAGAGA
ATCTGGTGTGAAATTTGAGCACATATCTGCTCCACAGCCAGCTGATATTG
CCAAGGCTGCAGGTGTGGAAGCTGCTGAAACAATAACCCAAGTTTCTGAT
AGTGTAATTCCCGCTTTCAAGTCCGCTGCTGAGGAGCTGTTGAATAATTC
TGGTCTATCAGCAGCAGAGCTGCTTGCAAAAGCACTAGCCAAGGCTGTAG
GTTATACTGAGATAAAGAGTAGATCACTTCTTAGTTCTTTGGAGGATCAT
GNTACAGTGGTTCTTGAAAGCAGAAGCCCATCTACCACCATCCTTTGCTT
TTTGTGTCTGAGAGATTCTTGCCCTGAGAAAA
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