EY661498

Overview
NameEY661498
Unique NameEY661498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9362 contig Csv1_Contig9362:1007..1888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DBPA_BACSU (ATP-dependent RNA helicase dbpA OS=Bacillus subtilis GN=dbpA PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.823e-23
Identity = 74/237 (31.22%), Postives = 125/237 (52.74%), Query Frame = 3
Query:   12 TLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKAS----TNVRHIVLPCSSSARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDP-RKSSVSKIERESGVKFEHISAPQPADIAKAAGVEAAETITQVSDSVIPAFKSAAEELLN 695
            T+LFSATLP  ++ +S +++++ +         ++KA+     N+ H V+      +  ++ D++   +     IIF  TKE  +QL D L         +HG + Q  R   +  F+ G++  LVAT+VAARG+DI ++ L+I  + P + E+Y+HR+GRTGRAGN G A+       K  ++ IE   G + + I AP   ++A+    +  E + +++D   P  K    E LN
Sbjct:  178 TMLFSATLPQDIEKLSRQYMQNPEHI-------EVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENPDS-CIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIEAPSQEEVAR----KKPEFLAKLNDR--PESKKDKSEELN 400          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DBP3_SCHPO (ATP-dependent RNA helicase dbp3 OS=Schizosaccharomyces pombe GN=dbp3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.687e-23
Identity = 69/182 (37.91%), Postives = 105/182 (57.69%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIV-LPCSSSARSQVIPDIIRCY-SSGGRT---IIFTETKESASQLADLLP---GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSS 530
            QT+ FSAT P  V+ ++  FLK   K    +G++++ AS N+  IV +     ++ +++ +++R + SSGG+    +IF   K+ A+++   L        +HGD+ Q  R   L  F+SGK   LVAT+VAARGLDI  VQL+I    P  +E Y+HR GRTGRA   G A+  + P+  S
Sbjct:  347 QTVFFSATWPESVRALAATFLKDPVKIT--IGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKS 526          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DDX3_DROME (ATP-dependent RNA helicase bel OS=Drosophila melanogaster GN=bel PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.815e-23
Identity = 68/185 (36.76%), Postives = 97/185 (52.43%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRC------YSSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSV 533
            QTL+FSAT P  ++ +++ FL +    I L        S N+   +L      +   + D++        Y+    T+IF ETK+ A  L + L        ++HGD  Q +RE  L  FRSG    LVAT VAARGLDI  V+ +I  + P DVE Y+HR GRTGR GN GVA   ++ +  ++
Sbjct:  489 QTLMFSATFPKQIQELASDFLSN---YIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNI 670          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DBP3_CANAL (ATP-dependent RNA helicase DBP3 OS=Candida albicans GN=DBP3 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.815e-23
Identity = 64/184 (34.78%), Postives = 106/184 (57.61%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCY----SSGGRTIIFTETKESASQLADLLPGAR----ALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 536
            QTL+F+AT P  V+ ++  F+ S  K + +   +++ A+  +  +V   +   + + +  ++R Y    SS  + +IF   K+ AS++ + L   R    A+HGD+ Q QR   L+ F+SG+   L+AT+VAARGLDI +V+++I    P  +E Y+HR GRTGRAG  G A  L+   +  +S
Sbjct:  330 QTLMFTATWPKEVRELANNFMNSPVK-VTVGDRDELSANKRITQVVEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDEKHLS 512          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DBP3_YARLI (ATP-dependent RNA helicase DBP3 OS=Yarrowia lipolytica GN=DBP3 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.289e-23
Identity = 65/181 (35.91%), Postives = 106/181 (58.56%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG-RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 536
            QT++FSAT P  V+ ++  F+K+  K + +   +++ A+  +   V      A+   + D++R Y++   + +IF   K+ A+++ + L     G  A+HGD+ Q QR   L  F+ G+   L+AT+VAARGLDI +V+L+I    P  VE Y+HR GRTGRAG TG A+ L+   +  +S
Sbjct:  301 QTVMFSATWPPEVRKLAEGFMKTPTKVM-IGERDELAANKRITQSVEVLDPRAKEGRLLDLLRQYANDDFKILIFALYKKEATRVENTLTRRGYGVAAIHGDLSQQQRTKALDEFKKGEKNILLATDVAARGLDIPNVKLVINLTFPLTVEDYVHRIGRTGRAGKTGQAITLFTEHEKHLS 480          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: RH37_ARATH (DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 8.214e-23
Identity = 67/187 (35.83%), Postives = 101/187 (54.01%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGG------RTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 539
            QTLLFSAT P  ++ ++  FL +       VG         V+ +     S  RS ++ D++      G       T++F ETK  A  L + L      A ++HGD  Q +REV L  F+SG+   LVAT+VAARGLDI  V  ++  + P D++ Y+HR GRTGRAG +G+A   ++   +S+++
Sbjct:  348 QTLLFSATFPREIQRLAADFLAN--YIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLM-DLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLAR 531          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: PRP5_EMENI (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Emericella nidulans GN=prp5 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.214e-23
Identity = 78/244 (31.97%), Postives = 125/244 (51.23%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDII-RCYSSG----GRTIIFTETKESASQLADLLPG----ARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSKIERESGVKFEHISAPQPADIAKA---AGVEAAETITQVSDSVIPAFKSAAEELLNNSG 704
            QT+LFSAT P  ++ ++ K L    K I++V   +   +  +  IV  C+   +   + +++   YS+      R++IF + +E+A  L   L        ++HG   Q  R+ T+  F++G F  L+AT+VAARGLD+  ++L++  + P  +E Y+HR+GRTGRAGNTG AV      +   S                   DIAKA   +G E  E + ++ DS +   K A +E  +NSG
Sbjct:  724 QTVLFSATFPRNMEALARKTLT---KPIEIVVGGRSVVAPEITQIVEVCNEEKKFVRLLELLGNLYSTDENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQERYS------------------VDIAKALKQSGQEVPEAVQKLVDSFLEKVK-AGKEKASNSG 945          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.214e-23
Identity = 66/182 (36.26%), Postives = 101/182 (55.49%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSS-SARSQVIPDIIRCYSSGGRTIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVSK 539
            QTLLFSAT P  V+ ++  FL    +    +G+  + A+ NV   V  C+    RS+++  + +     G+ +IF  TK  A  L   L      A A+HGD QQ++R+  LA F+SG+   ++AT+VA+RGLD+ D+  +I  + P + E YIHR GRTGRAG  G +   +    S  ++
Sbjct:  290 QTLLFSATWPKEVQRLAMDFLHDFIQVN--IGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEKISQENGKVLIFVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVASRGLDVRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDNSKAAR 469          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DBP3_PICST (ATP-dependent RNA helicase DBP3 OS=Pichia stipitis GN=DBP3 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.401e-22
Identity = 64/184 (34.78%), Postives = 103/184 (55.98%), Query Frame = 3
Query:    9 QTLLFSATLPSWVKHISTKFLKSDKKTIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSGGR----TIIFTETKESASQLADLLP----GARALHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 536
            QTL+F+AT P  V+ +++ F+    K + +   +++ A+  +  IV       + + +  ++R Y SG +     +IF   K+ A+++  LL        A+HGD+ Q QR   L  F+ G+   L+AT+VAARGLDI +V+++I    P  VE Y+HR GRTGRAG TG A  L+   +  +S
Sbjct:  292 QTLMFTATWPQEVRKLASTFMNQPVK-VSIGDRDELAANKRITQIVEVIEPFDKEKKLLGLLRQYQSGSKKNDKVLIFALYKKEATRIEGLLRRNSYNVAAIHGDLSQQQRTNALNSFKKGESSLLLATDVAARGLDIPNVKVVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEHEKHLS 474          
BLAST of EY661498 vs. ExPASy Swiss-Prot
Match: DBP3_PHANO (ATP-dependent RNA helicase DBP3 OS=Phaeosphaeria nodorum GN=DBP3 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.830e-22
Identity = 65/187 (34.76%), Postives = 107/187 (57.22%), Query Frame = 3
Query:    3 KVQTLLFSATLPSWVKHISTKFLKSDKK-TIDLVGNEKMKASTNVRHIVLPCSSSARSQVIPDIIRCYSSG----GRTIIFTETKESASQLADLL--PGARA--LHGDIQQSQREVTLAGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSSVS 536
            K QTL+F+AT P  V+ +++ F+ S  + TI    + +++A+  ++ +V      A+ Q +  +++ Y SG     R ++F   K+ A ++ + +   G R   +HGD+ Q +R  +LA F+ G+   LVAT+VAARGLDI  V+L+I    P   E Y+HR GRTGRAG  G+A+  +      +S
Sbjct:  354 KRQTLMFTATWPPSVRDLASTFMVSPVRITIGDNQSGELRANVRIKQLVEVLDPHAKEQRLLQLLKQYQSGKNKDDRILVFCLYKKEAMRIENFIRMKGFRVGGIHGDLSQEKRSASLAAFKEGQVPLLVATDVAARGLDIPAVKLVINVTFPLTAEDYVHRIGRTGRAGKEGLAITFFTEHDKGLS 540          
The following BLAST results are available for this feature:
BLAST of EY661498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBPA_BACSU2.823e-2331.22ATP-dependent RNA helicase dbpA OS=Bacillus subtil... [more]
DBP3_SCHPO3.687e-2337.91ATP-dependent RNA helicase dbp3 OS=Schizosaccharom... [more]
DDX3_DROME4.815e-2336.76ATP-dependent RNA helicase bel OS=Drosophila melan... [more]
DBP3_CANAL4.815e-2334.78ATP-dependent RNA helicase DBP3 OS=Candida albican... [more]
DBP3_YARLI6.289e-2335.91ATP-dependent RNA helicase DBP3 OS=Yarrowia lipoly... [more]
RH37_ARATH8.214e-2335.83DEAD-box ATP-dependent RNA helicase 37 OS=Arabidop... [more]
PRP5_EMENI8.214e-2331.97Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DBP2_CRYNE8.214e-2336.26ATP-dependent RNA helicase DBP2-A OS=Cryptococcus ... [more]
DBP3_PICST1.401e-2234.78ATP-dependent RNA helicase DBP3 OS=Pichia stipitis... [more]
DBP3_PHANO1.830e-2234.76ATP-dependent RNA helicase DBP3 OS=Phaeosphaeria n... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-G10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661498 ID=EY661498; Name=EY661498; organism=Citrus sinensis; type=EST; length=882bp
ATAAAGTTCAAACACTTCTCTTCAGTGCCACCTTGCCAAGCTGGGTGAAG
CATATTTCCACCAAGTTTCTTAAATCAGACAAGAAAACCATAGATCTTGT
TGGCAATGAGAAAATGAAGGCTAGTACCAATGTCCGGCATATTGTTCTTC
CTTGTTCTAGTTCAGCGAGATCTCAAGTCATTCCTGATATCATTCGTTGT
TATAGCAGTGGAGGCCGAACTATTATTTTCACCGAGACAAAGGAAAGTGC
TTCTCAGCTTGCTGACTTGCTGCCTGGTGCACGGGCTTTACATGGGGACA
TACAGCAGTCTCAACGTGAGGTGACACTTGCTGGGTTCAGGTCAGGAAAG
TTCATGACATTAGTTGCCACAAATGTGGCGGCACGGGGTTTGGACATTAA
TGATGTGCAGTTAATTATTCAGTGTGAGCCTCCTCGTGATGTAGAAGCCT
ATATACATCGATCTGGACGTACTGGAAGAGCAGGCAATACTGGAGTTGCT
GTAATGCTTTATGATCCTAGAAAGTCAAGTGTATCTAAGATAGAAAGAGA
ATCTGGTGTGAAATTTGAGCACATATCTGCTCCACAGCCAGCTGATATTG
CCAAGGCTGCAGGTGTGGAAGCTGCTGAAACAATAACCCAAGTTTCTGAT
AGTGTAATTCCCGCTTTCAAGTCCGCTGCTGAGGAGCTGTTGAATAATTC
TGGTCTATCAGCAGCAGAGCTGCTTGCAAAAGCACTAGCCAAGGCTGTAG
GTTATACTGAGATAAAGAGTAGATCACTTCTTAGTTCTTTGGAGGATCAT
GNTACAGTGGTTCTTGAAAGCAGAAGCCCATCTACCACCATCCTTTGCTT
TTTGTGTCTGAGAGATTCTTGCCCTGAGAAAA
back to top