EY661495

Overview
NameEY661495
Unique NameEY661495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7543 contig Csv1_Contig7543:1..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR4_ARATH (Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.326e-34
Identity = 76/198 (38.38%), Postives = 109/198 (55.05%), Query Frame = 1
Query:  175 SKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGL-NRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCK-------INTTNPCRHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASR 744
            S S  V  V  FGA GDG  DDT AF +AWK AC+  +   ++   G  F I     SGPCK  L  ++ G ++ P  P+ W    N+ +WL F R++  T  G GT+ G GQ+WW   CK        +++ PC  +PT I F    N++V+ L + NS Q H+ F  C  V+I+ +++ +P  SPNTDGIH+  +R
Sbjct:   74 SDSGCVFDVTSFGAVGDGSCDDTAAFQDAWKAACAVESGV-VLAPEGGVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKGTVEGNGQKWWDLPCKPHRGPDGSSSSGPCA-SPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGIHLGNTR 269          

HSP 2 Score: 26.5646 bits (57), Expect = 1.326e-34
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  759 DSIVGTGDDCISIG 800
            +S+V  GDDCISIG
Sbjct:  275 NSVVSNGDDCISIG 288          
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.185e-32
Identity = 71/188 (37.77%), Postives = 102/188 (54.26%), Query Frame = 1
Query:  181 SKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSR-LTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISAS 741
            S   + V  FGA GDG  DD++AF  AW+  CS     + V  AG TF++ P+   G CKS  + +++ G +VAP   + WKG ++ +W+ F  +  L ++G G ING G  WW               PTA+ F  C NL++  L  ++S   HI  + C  V IS+L++ AP  SPNTDGI + AS
Sbjct:   20 SSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSKGN-WKG-DKDQWILFTDIEGLVIEGDGEINGQGSSWWEHKGS---------RPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGAS 196          

HSP 2 Score: 25.409 bits (54), Expect = 1.185e-32
Identity = 9/17 (52.94%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  759 DSIVGTGDDCISIGGNS 809
            D I+ TGDDCI+I   +
Sbjct:  203 DCIIATGDDCIAINSGT 219          
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.612e-32
Identity = 73/188 (38.83%), Postives = 103/188 (54.79%), Query Frame = 1
Query:  190 VIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCK-INTTNPC--RHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASR 744
            V  V  +GA GDG +D T+AF   W  AC+  +   +V  A   F+++ +   GPC+   + K+ GTI A  DP  WK  N + W++F R+    + G G I+G G  WWS  CK IN    C  +  PTAI     K++ V+ L + NS + H+ F  C  V I  +K+ AP +SPNTDGI I AS+
Sbjct:   59 VFNVEHYGAVGDGKHDSTDAFEKTWNAACNKLSAVFLV-PANKKFVVNNLVFYGPCQPHFSFKVDGTIAAYPDPAKWK--NSKIWMHFARLTDFNLMGTGVIDGQGNRWWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASK 243          

HSP 2 Score: 26.1794 bits (56), Expect = 2.612e-32
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  768 VGTGDDCISIGGNS 809
            +GTGDDC+++G  S
Sbjct:  252 IGTGDDCVAVGTGS 265          
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.332e-30
Identity = 67/187 (35.83%), Postives = 100/187 (53.48%), Query Frame = 1
Query:  175 SKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHIS 735
            S +  V  +  FGA GDG  +  +AF N W + C  P    ++   G TFL  P+  +GPCKS++T+ + GTI+A        G     W  F RV++L + G GT +G G+  W ++        C   PT++ F   KN+++  +  VN++  H+       V I N+K+ APAESPNTDGIH+S
Sbjct:   46 SGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPVPATLLVPKG-TFLAGPVIFAGPCKSKVTVNVIGTIIATTS-----GYATPEWFLFERVDNLVLTGTGTFHGKGEAVW-KADGCGKKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLS 225          

HSP 2 Score: 28.8758 bits (63), Expect = 2.332e-30
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  759 DSIVGTGDDCISIGGNSH 812
            DS + TGDDC+S+G  S+
Sbjct:  234 DSTIATGDDCVSVGRGSN 251          
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.955e-28
Identity = 70/184 (38.04%), Postives = 96/184 (52.17%), Query Frame = 1
Query:  199 VGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSR-LTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRG 747
            V   GAK DG  D T+AF +AW KAC+      I   AG TF +  +  SGPCK+  +T +I+GT+VAP D  V    N   W++F+ VN +T+ GG  ++G G   W+  CK      C    T + F    N+ V  L  +NSQ  HI   +   V +  ++V     SPNTDGIH+  S G
Sbjct:   30 VASLGAKADGKTDSTKAFLSAWAKACASMNPGVIYVPAG-TFFLRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIG--NAANWIFFHHVNGVTISGG-ILDGQGTALWA--CKACHGESCPSGATTLGFSDSNNIVVSGLASLNSQMFHIVINDFQNVQMQGVRVSRSGNSPNTDGIHVQMSSG 207          

HSP 2 Score: 25.409 bits (54), Expect = 5.955e-28
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  759 DSIVGTGDDCISIG 800
            +S + TGDDC+SIG
Sbjct:  212 NSKIATGDDCVSIG 225          
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.389e-27
Identity = 71/225 (31.56%), Postives = 112/225 (49.78%), Query Frame = 1
Query:   73 VLIHVLVCLSASLVSTEGFDSLLELPHSGSNRTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRG 747
            + + +L+ +SAS V ++ FD                      V  FGAK DG  D ++ F +AWK+AC+    + +V   G T+L+  +++ GPCK+ + + + GTI AP DP  +K  N   W+ F  V +  + GGG  +G G   + ++   N     +  P  I F    N  +Q++   +S+  HI    C  + +  LK+ AP ESPNTDGIH+  S G
Sbjct:   11 MFVLLLLFISASKVQSDAFD---------------------VVAKFGAKADGKTDLSKPFLDAWKEACASVTPSTVVIPKG-TYLLSKVNLEGPCKAPIEINVQGTIQAPADPSAFKDPN---WVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRSK-LPVNIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEG 209          

HSP 2 Score: 24.6386 bits (52), Expect = 6.389e-27
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  762 SIVGTGDDCISIG 800
            S + TGDDCISIG
Sbjct:  215 SDIKTGDDCISIG 227          
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.082e-26
Identity = 71/225 (31.56%), Postives = 111/225 (49.33%), Query Frame = 1
Query:   73 VLIHVLVCLSASLVSTEGFDSLLELPHSGSNRTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRG 747
            + + +L+ +SAS V  + FD                      V  FGAK DG  D ++ F +AWK+AC+    + +V   G T+L+  +++ GPCK+ + + + GTI AP DP  +K  N   W+ F  V +  + GGG  +G G   + ++   N     +  P  I F    N  +Q++   +S+  HI    C  + +  LK+ AP ESPNTDGIH+  S G
Sbjct:   11 MFVLLLLFISASKVQPDAFD---------------------VVAKFGAKADGKTDLSKPFLDAWKEACASVTPSTVVIPKG-TYLLSKVNLEGPCKAPIEINVQGTIQAPADPSAFKDPN---WVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRSK-LPVNIRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEG 209          

HSP 2 Score: 24.6386 bits (52), Expect = 1.082e-26
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  762 SIVGTGDDCISIG 800
            S + TGDDCISIG
Sbjct:  215 SDIKTGDDCISIG 227          
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.409e-26
Identity = 57/179 (31.84%), Postives = 99/179 (55.31%), Query Frame = 1
Query:  211 GAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRG 747
            GA G+G  D T+A   AW  AC    +  I+   G  FL+ P++ +GPCK  +T++++G ++A  D   +K  +   W+   RV++L + G G ++G G   WS++  +   + C+  P ++      N +V  + ++NS+  H+    C  ++I ++ V AP +SPNTDGIH+  S G
Sbjct:   47 GASGNGKTDSTKAVQEAWASACGGTGKQTILIPKG-DFLVGPLNFTGPCKGDVTIQVNGNLLATTDLSQYK--DHGNWIEILRVDNLVITGKGKLDGQGPAVWSKNSCVKKYD-CKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSG 221          

HSP 2 Score: 27.7202 bits (60), Expect = 1.409e-26
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  756 SDSIVGTGDDCISIG 800
            +++++G GDDCISIG
Sbjct:  225 TNTVIGVGDDCISIG 239          
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.410e-26
Identity = 68/202 (33.66%), Postives = 104/202 (51.49%), Query Frame = 1
Query:  136 LLELPHSGSNRTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISAS 741
            LL L H G ++T      V  +  +GA  +   D +EA  NA+K+AC   + + IV   G TF ++ + + GPCKS L L+I  T+ AP DP     L    WL  N+++  T+ GGG ++G     W   CK   +  C   P  ++F+   N  ++++  ++S+  H+    C  +      V APA SPNTDGIH+S S
Sbjct:   13 LLFLAHFGESQTG-----VFDITKYGANSNA--DISEALLNAFKEACQSTSPSTIVIPKG-TFTMNQVKLEGPCKSPLELQIQATLKAPSDPSQ---LKVGEWLTVNKLDQFTMSGGGILDGQAAAAWE--CK--QSKKCNKLPNNLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTFIRFNVSAPANSPNTDGIHVSRS 199          

HSP 2 Score: 26.1794 bits (56), Expect = 1.410e-26
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 3
Query:  756 SDSIVGTGDDCISIG 800
            +DS   TGDDCIS+G
Sbjct:  205 TDSNFSTGDDCISVG 219          
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.837e-26
Identity = 67/191 (35.08%), Postives = 104/191 (54.45%), Query Frame = 1
Query:  181 SKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCK-SRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRS-CKINTTNPCRHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRG 747
            S  V  V D+GAKG G  D ++A   AWK AC+    + ++   G  + +  + + GPCK S++  +I G + AP DP  +K      W+ F R++ LTV G GT++G GQ  W+++ C  N    C+HA   + F   K+  V+++  +NS+  HI    C  +   ++ V AP  S NTDGIH+  S+G
Sbjct:    6 SGSVFNVNDYGAKGAG--DISQAVMKAWKAACASQGPSTVLIPKG-NYNMGEVAMQGPCKGSKIGFQIDGVVKAPADPSKFKSDG---WVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKNPN--CKHAAMNLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVGISKG 188          

HSP 2 Score: 25.7942 bits (55), Expect = 1.837e-26
Identity = 10/14 (71.43%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  768 VGTGDDCISIGGNS 809
            + TGDDCISIG  S
Sbjct:  196 IATGDDCISIGPGS 209          
The following BLAST results are available for this feature:
BLAST of EY661495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PGLR4_ARATH1.326e-3438.38Polygalacturonase At1g48100 OS=Arabidopsis thalian... [more]
PGLR3_ARATH1.185e-3237.77Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR2_JUNAS2.612e-3238.83Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 ... [more]
PGLR1_ARATH2.332e-3035.83Exopolygalacturonase clone GBGE184 OS=Arabidopsis ... [more]
PGLR_PRUPE5.955e-2838.04Polygalacturonase OS=Prunus persica PE=2 SV=1[more]
PGLR_GOSHI6.389e-2731.56Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2... [more]
PGLR_GOSBA1.082e-2631.56Polygalacturonase OS=Gossypium barbadense GN=G9 PE... [more]
PGLR3_MAIZE1.409e-2631.84Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1[more]
PGLR_TOBAC1.410e-2633.66Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2... [more]
PGLR2_PLAAC1.837e-2635.08Exopolygalacturonase (Fragment) OS=Platanus acerif... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-G07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661495 ID=EY661495; Name=EY661495; organism=Citrus sinensis; type=EST; length=835bp
CCACGCGTCCGAATTCAGTTAAGAAAGAACATGAAGCAACTTAAGTTTTG
TTCGTTTTCAACATTTTTTATAGTTCTAATCCATGTGCTTGTTTGTCTGT
CAGCAAGCTTGGTTTCTACAGAAGGCTTTGACTCGTTGTTGGAGCTCCCA
CATTCTGGGTCAAACAGAACTCGATCCAAATCCAAAAGGGTAATTTTTGT
TGGTGATTTTGGTGCCAAAGGAGATGGCTTCAATGATGACACTGAGGCAT
TTGCAAATGCTTGGAAGAAGGCTTGTTCTTTTCCTGCACGAACAAAAATT
GTTTTTTCAGCTGGATACACTTTTCTAATCCATCCCATCGATATTTCTGG
GCCCTGTAAATCTAGACTTACTTTGAAGATATCTGGAACAATAGTTGCTC
CTAAAGATCCTGATGTCTGGAAGGGTTTGAATCGACGTAGATGGCTCTAC
TTTAATCGGGTGAACCATCTTACTGTACAAGGAGGAGGGACAATCAATGG
AATGGGACAGGAATGGTGGTCAAGATCCTGCAAGATTAACACAACAAATC
CATGTCGACATGCTCCAACGGCTATTACTTTTCATAAGTGCAAGAATTTG
AAAGTCCAGAACCTTANGGTGGTCAACAGTCAACAAATGCACATTGCATT
CACTAATTGTCTACGGGTTGTGATATCCAATCTCAAGGTGATTGCACCTG
CTGAAAGTCCTAATACNGATGGGATACACATCAGTGCATCTCGTGGTGGT
GAAAGTCAGATAGCATAGTTGGAACAGGAGATGACTGCATATCTATAGGT
GGGAATTCTCACTAATCCGATCAGAAACTTTGCTG
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