EY661495

Overview
NameEY661495
Unique NameEY661495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.331e-25
Identity = 56/179 (31.28%), Postives = 94/179 (52.51%), Query Frame = 1
Query:  211 GAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRG 747
            GA G+G  D T+A   AW  AC    +  I+   G  FL+  ++ +GPCK  +T+++ G ++A  D   +K      W+   RV++L + G G ++G G   WS++        C+  P ++      N +V  + ++NS+  H+    C  ++I ++ V AP +SPNTDGIH+  S G
Sbjct:   47 GASGNGKTDSTKAVQEAWASACGGTGKQTILIPKG-DFLVGQLNFTGPCKGDVTIQVDGNLLATTDLSQYK--EHGNWIEILRVDNLVITGKGNLDGQGPAVWSKN-SCTKKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGIHMGDSSG 221          

HSP 2 Score: 27.7202 bits (60), Expect = 3.331e-25
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  756 SDSIVGTGDDCISIG 800
            +++++G GDDCISIG
Sbjct:  225 TNTVIGVGDDCISIG 239          
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.335e-25
Identity = 56/179 (31.28%), Postives = 95/179 (53.07%), Query Frame = 1
Query:  211 GAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRG 747
            GA G+G  D T+A   AW  AC    +  I+   G  FL+  ++ +GPCK  +T+++ G ++A  D   +K  +   W+   RV++L + G G ++G G   WS++        C+  P ++      N +V  + ++NS+  H+    C  ++I ++ V AP +SPNTDGIH+  S G
Sbjct:   47 GASGNGKTDSTKAVQEAWASACGGTGKQTILIPKG-DFLVGQLNFTGPCKGDVTIQVDGNLLATTDLSQYK--DHGNWIEILRVDNLVITGKGNLDGQGPAVWSKN-SCTKKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSG 221          

HSP 2 Score: 27.7202 bits (60), Expect = 4.335e-25
Identity = 9/15 (60.00%), Postives = 14/15 (93.33%), Query Frame = 3
Query:  756 SDSIVGTGDDCISIG 800
            +++++G GDDCISIG
Sbjct:  225 TNTVIGVGDDCISIG 239          
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.107e-24
Identity = 60/179 (33.52%), Postives = 94/179 (52.51%), Query Frame = 1
Query:  208 FGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSR-LTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISAS 741
            +GAK DG  D T+AF  AW  AC+    T I+   G   + + +     CK   ++++I+G+IVAP+D  +    + + W++F  V  +++ GG  ++  G   W   CK N  + C     ++ F    N+K+  L  +NSQ+ HI   N   V I  +KV A   SPNTDGIH+ +S
Sbjct:   38 YGAKPDGSKDSTKAFLAAWDVACASANPTTIIVPKGRFLVGNLVFHGNECKQAPISIRIAGSIVAPEDFRIIA--SSKHWIWFEDVTDVSIYGG-ILDAQGTSLWK--CKNNGGHNCPTGAKSLVFSGSNNIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESS 211          

HSP 2 Score: 29.261 bits (64), Expect = 2.107e-24
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  756 SDSIVGTGDDCISIGGNS 809
            ++S +GTGDDCISIG  S
Sbjct:  217 TNSRIGTGDDCISIGPGS 234          
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.856e-24
Identity = 59/187 (31.55%), Postives = 95/187 (50.80%), Query Frame = 1
Query:  190 VIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINT---TNPCRHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISAS 741
            V+ +  FG K +  +D  +A  +AW +AC+     KIV  AG T+ ++ I++ GPCK+ + L++ GTI AP DP V KG    +W  F  ++HLT+ G G  +G G   + ++   +     N          F+   N  V+ +   +S+  H+    C  +      + AP +SPNTDGIH+  S
Sbjct:   24 VLDISKFGGKPN--SDIGQALTSAWNEACASTTAAKIVIPAG-TYQLNGIELKGPCKAPIELQVDGTIQAPADPSVIKG--TEQWFKFLYMDHLTLSGKGVFDGQGATVYKKAAPASAWSGKNSNSKVFMNFGFNFVNNSIVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKS 205          

HSP 2 Score: 28.1054 bits (61), Expect = 7.856e-24
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  768 VGTGDDCISIGGNS 809
            +GTGDDC+SIG  S
Sbjct:  215 IGTGDDCVSIGDGS 228          
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR2_ARATH (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.329e-23
Identity = 66/199 (33.17%), Postives = 98/199 (49.25%), Query Frame = 1
Query:  157 GSNRTRSKSKRVIFVGDFGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTI-NGMGQ-EWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRG 747
            G+  + +K    + V   GAKGD   DD+ AFA AWK+AC+  A + I    G  +++  ++  GPCK  +TL+++G   AP      K      W+ F  +   T+ G   I +G G   W +  C    T  C   P  I F    N K+ ++   NS+  H+   NC  + +S++ + AP ES NTDGIHI  S G
Sbjct:   58 GAKVSGAKPGAAVDVKASGAKGDSKTDDSAAFAAAWKEACA--AGSTITVPKG-EYMVESLEFKGPCKGPVTLELNGNFKAPATVKTTKP--HAGWIDFENIADFTLNGNKAIFDGQGSLAWKANDCA--KTGKCNSLPINIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNG 249          

HSP 2 Score: 23.8682 bits (50), Expect = 1.329e-23
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  768 VGTGDDCISIG 800
            + TGDDC+SIG
Sbjct:  257 IKTGDDCVSIG 267          
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.426e-22
Identity = 54/171 (31.58%), Postives = 88/171 (51.46%), Query Frame = 1
Query:  235 DDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRG 747
            D T+A   AWK+AC+  + + I+   G  F +  I + GPCKS + L++ GT+ AP DP   KGL    W+  N+++ LT+ GGG  +G G+  W ++        C+     +  +   N  ++++  ++S+  H+    C  +     K+ A   S NTDGIHI  S G
Sbjct:    1 DSTQALTTAWKEACASASPSTILVPKG-NFAVGLITLEGPCKSSIGLQLQGTLKAPADPSKIKGLG---WINLNKIDLLTIFGGGVFDGQGKSAWVQNDCHKNGPICKTLSMNLRLYAVTNSILRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDG 167          

HSP 2 Score: 24.6386 bits (52), Expect = 1.426e-22
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  768 VGTGDDCISIGGNS 809
            + TGDDCIS+G  S
Sbjct:  175 IKTGDDCISLGDGS 188          
BLAST of EY661495 vs. ExPASy Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.664e-21
Identity = 53/180 (29.44%), Postives = 90/180 (50.00%), Query Frame = 1
Query:  208 FGAKGDGFNDDTEAFANAWKKACSFPARTKIVFSAGYTFLIHPIDISGPCKSRLTLKISGTIVAPKDPDVWKGLNRRRWLYFNRVNHLTVQGGGTINGMGQEWWSRSCKINTTNPCRHAPTAITFHKCKNLKVQNLXVVNSQQMHIAFTNCLRVVISNLKVIAPAESPNTDGIHISASRG 747
            F A G   +D T A   A+  AC  PA ++++   G  F +    ++GPCKS +   + G +      D      + RW+ F ++N   + GGGT +G G   W  +   + T  C+  P ++ F    N +++++  ++++  H    +   +   N+K+IAPAESPNTDGIH+    G
Sbjct:   25 FTAGGPPNSDITAAVLKAFTSACQAPAPSQVLIPKG-DFKLGETVMTGPCKSPIEFTLQGNVKT----DGGSTQGKDRWVVFEKINGFKLNGGGTFDGEGNAAWKAN-NCHKTFECKKLPISVRFDFVDNAEIKDVTSLDAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHLGRCEG 198          

HSP 2 Score: 24.6386 bits (52), Expect = 5.664e-21
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  768 VGTGDDCISIG 800
            + TGDDCIS+G
Sbjct:  206 IATGDDCISVG 216          
The following BLAST results are available for this feature:
BLAST of EY661495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PGLR2_MAIZE3.331e-2531.28Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]
PGLR1_MAIZE4.335e-2531.28Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]
PGLR6_ARATH2.107e-2433.52Probable polygalacturonase At2g43860 OS=Arabidopsi... [more]
PGLR_MEDSA7.856e-2431.55Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]
PGLR2_ARATH1.329e-2333.17Exopolygalacturonase clone GBGA483 OS=Arabidopsis ... [more]
PGLR_OENOR1.426e-2231.58Exopolygalacturonase (Fragment) OS=Oenothera organ... [more]
PGLR_BRANA5.664e-2129.44Polygalacturonase OS=Brassica napus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-G07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661495 ID=EY661495; Name=EY661495; organism=Citrus sinensis; type=EST; length=835bp
CCACGCGTCCGAATTCAGTTAAGAAAGAACATGAAGCAACTTAAGTTTTG
TTCGTTTTCAACATTTTTTATAGTTCTAATCCATGTGCTTGTTTGTCTGT
CAGCAAGCTTGGTTTCTACAGAAGGCTTTGACTCGTTGTTGGAGCTCCCA
CATTCTGGGTCAAACAGAACTCGATCCAAATCCAAAAGGGTAATTTTTGT
TGGTGATTTTGGTGCCAAAGGAGATGGCTTCAATGATGACACTGAGGCAT
TTGCAAATGCTTGGAAGAAGGCTTGTTCTTTTCCTGCACGAACAAAAATT
GTTTTTTCAGCTGGATACACTTTTCTAATCCATCCCATCGATATTTCTGG
GCCCTGTAAATCTAGACTTACTTTGAAGATATCTGGAACAATAGTTGCTC
CTAAAGATCCTGATGTCTGGAAGGGTTTGAATCGACGTAGATGGCTCTAC
TTTAATCGGGTGAACCATCTTACTGTACAAGGAGGAGGGACAATCAATGG
AATGGGACAGGAATGGTGGTCAAGATCCTGCAAGATTAACACAACAAATC
CATGTCGACATGCTCCAACGGCTATTACTTTTCATAAGTGCAAGAATTTG
AAAGTCCAGAACCTTANGGTGGTCAACAGTCAACAAATGCACATTGCATT
CACTAATTGTCTACGGGTTGTGATATCCAATCTCAAGGTGATTGCACCTG
CTGAAAGTCCTAATACNGATGGGATACACATCAGTGCATCTCGTGGTGGT
GAAAGTCAGATAGCATAGTTGGAACAGGAGATGACTGCATATCTATAGGT
GGGAATTCTCACTAATCCGATCAGAAACTTTGCTG
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