EY661488

Overview
NameEY661488
Unique NameEY661488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: KHDR2_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.791e-23
Identity = 62/136 (45.59%), Postives = 85/136 (62.50%), Query Frame = 3
Query:  471 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLNQISEKIAG 872
            S+  +K   R+ IPV  YP FNFVG+LLGPRGNSLKR++  TG ++ I GKGS++D  KE++LR  G   Y HL+D LH+LIE   P      R+  A E I++ L  V +  D I+++Q RE++ LN   E   G
Sbjct:   54 SNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKTKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFL--VPDYNDEIRQEQLRELSYLNGSEESGRG 187          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: KHDR2_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.951e-23
Identity = 62/136 (45.59%), Postives = 85/136 (62.50%), Query Frame = 3
Query:  471 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLNQISEKIAG 872
            S+  +K   R+ IPV  YP FNFVG+LLGPRGNSLKR++  TG ++ I GKGS++D  KE++LR  G   Y HL+D LH+LIE   P      R+  A E I++ L  V +  D I+++Q RE++ LN   E   G
Sbjct:   54 SNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFL--VPDYNDEIRQEQLRELSYLNGSEESGRG 187          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: KHDR2_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.446e-23
Identity = 60/128 (46.88%), Postives = 83/128 (64.84%), Query Frame = 3
Query:  471 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLN 848
            S+  +K   R+ IPV  YP FNFVG+LLGPRGNSLKR++  TG ++ I GKGS++D  KE++LR  G   Y HL+D LH+LIE   P      R+  A E I++ L  V +  D I+++Q RE++ LN
Sbjct:   54 SNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFL--VPDYNDEIRQEQLRELSYLN 179          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: KHDR2_DANRE (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.209e-22
Identity = 58/128 (45.31%), Postives = 83/128 (64.84%), Query Frame = 3
Query:  471 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLN 848
            S+  +K   R+ IPV  YP FNFVG+LLGPRGNS+KR++  TG ++ I GKGS++D  KE++LR  G   Y HL++ LH+LIE   P      R+  A E I++ L  V +  D I+++Q RE++ LN
Sbjct:   54 SNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGKEEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFL--VPDYNDEIRQEQLRELSYLN 179          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: KHDR2_XENTR (KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.634e-21
Identity = 57/128 (44.53%), Postives = 82/128 (64.06%), Query Frame = 3
Query:  471 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLN 848
            S+  +K   R+ IPV  YP FNFVG+LLGPRGNSLKR++  TG ++ I GKGS++D  KE++LR      + HL+D LH+L+E   P      R+  A E I++ L  V +  D I+++Q RE++ LN
Sbjct:   54 SNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELRKSDEAKHAHLSDELHVLLEVFAPPGEAYSRMSHALEEIKKFL--VPDYNDEIRQEQLRELSYLN 179          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: KHDR3_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.141e-19
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 3
Query:  507 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLNQISE 860
            IPV  +P FNFVG+LLGPRGNSLKR++  T  ++ I GKGS++D  KE++LR  G   Y HLND LH+LIE   P      R+  A E I++ L  + +  D I++ Q +E+  LN  SE
Sbjct:   62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEDIKKFL--IPDYNDEIRQAQLQELTYLNGGSE 179          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: KHDR3_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Mus musculus GN=Khdrbs3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.141e-19
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 3
Query:  507 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLNQISE 860
            IPV  +P FNFVG+LLGPRGNSLKR++  T  ++ I GKGS++D  KE++LR  G   Y HLND LH+LIE   P      R+  A E I++ L  + +  D I++ Q +E+  LN  SE
Sbjct:   62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFL--IPDYNDEIRQAQLQELTYLNGGSE 179          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: KHDR3_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.141e-19
Identity = 56/120 (46.67%), Postives = 76/120 (63.33%), Query Frame = 3
Query:  507 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLNQISE 860
            IPV  +P FNFVG+LLGPRGNSLKR++  T  ++ I GKGS++D  KE++LR  G   Y HLND LH+LIE   P      R+  A E I++ L  + +  D I++ Q +E+  LN  SE
Sbjct:   62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFL--IPDYNDEIRQAQLQELTYLNGGSE 179          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: KHDR1_CHICK (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.321e-19
Identity = 52/127 (40.94%), Postives = 78/127 (61.42%), Query Frame = 3
Query:  498 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLNQISEKIAG 872
            R+ IPV  YP FNFVG++LGP+GN++KR++  TG ++ + GKGS++D  KE++LR  G P Y HLN  LH+ IE   P       +  A E +++ L  V +  D I ++Q  E++ LN + E   G
Sbjct:  142 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFL--VPDMMDDICQEQFLELSYLNGVPEPTRG 266          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: KHDR1_RAT (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.338e-19
Identity = 52/127 (40.94%), Postives = 78/127 (61.42%), Query Frame = 3
Query:  498 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLNQISEKIAG 872
            R+ IPV  YP FNFVG++LGP+GN++KR++  TG ++ + GKGS++D  KE++LR  G P Y HLN  LH+ IE   P       +  A E +++ L  V +  D I ++Q  E++ LN + E   G
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFL--VPDMMDDICQEQFLELSYLNGVPEPSRG 283          
The following BLAST results are available for this feature:
BLAST of EY661488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
KHDR2_MOUSE3.791e-2345.59KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_RAT4.951e-2345.59KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_HUMAN8.446e-2346.88KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_DANRE3.209e-2245.31KH domain-containing, RNA-binding, signal transduc... [more]
KHDR2_XENTR4.634e-2144.53KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_RAT1.141e-1946.67KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_MOUSE1.141e-1946.67KH domain-containing, RNA-binding, signal transduc... [more]
KHDR3_HUMAN1.141e-1946.67KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_CHICK3.321e-1940.94KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_RAT4.338e-1940.94KH domain-containing, RNA-binding, signal transduc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-F11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661488 ID=EY661488; Name=EY661488; organism=Citrus sinensis; type=EST; length=897bp
CACGCGTCCGCCCTTTTCCTTTCTTTAAGAATCCCATTCTTTTGTTTGTT
CTAAATCCTCTAAAAAAGCAAGACAGTCACAAAGCCATGTCAGGTTTGTA
TAATCCCAACTTCTCACCTGCAAGAGCTGCTTCTCCACAAATTAGAAGCA
CCCCAGATATTAATATTGACAGTCAATACTTGTCAGAGCTTTTAGCTGAG
CATCAAAAGCTAGGACCTTTCACACAGGTGCTTCCGATATGCAGCCGACT
GTTAACTCAAGAGATATTTCGGGTTTCTGGGATGATGCCCAATCAAGGAT
TTGGTGACTTTGACAGACTGCGGCATAGAAGCCCCAGCCCCATGGCTTCT
TCAAATCTTATGTCAAACGTTGCAGGTACAGGGTTAGGTGGCTGGAATGG
CCTACCTCAGGAGAGATTAGGTGGACCTCCTGGCATGACGATGGATTGGC
AAAGTGCACCTGCAAGCCCTAGTTCATATACAGTCAAGAGAATTTTGCGT
TTGGAAATTCCAGTGGATACTTATCCTAACTTCAATTTTGTTGGACGGCT
TCTTGGTCCAAGGGGCAATTCACTGAAACGGGTTGAAGCTACTACTGGCT
GCCGTGTGTACATTAGAGGGAAGGGCTCAATAAAGGATCCAGACAAGGAA
GATAAGCTAAGGGGAAGGCCAGGCTATGAGCATCTCAATGATCCACTTCA
CATCTTAATTGAGGCTGATTTACCTGCCAACATTGTTGATATCAGGCTGA
GACAGGCGCAGGAGATTATAGAAGAATTGCTGAAAACTGTGGATGAGTCA
CAAGATTATATTAAGAGGCAGCAGNTGCGTGAAGTGGCAATGCTGAATCA
AATTTCAGAGAAGATAGCCGGGGCCAAGTGCCAGTGTTTCTTCCGTC
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