EY661488

Overview
NameEY661488
Unique NameEY661488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: KHDR1_MOUSE (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.338e-19
Identity = 52/127 (40.94%), Postives = 78/127 (61.42%), Query Frame = 3
Query:  498 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLNQISEKIAG 872
            R+ IPV  YP FNFVG++LGP+GN++KR++  TG ++ + GKGS++D  KE++LR  G P Y HLN  LH+ IE   P       +  A E +++ L  V +  D I ++Q  E++ LN + E   G
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFL--VPDMMDDICQEQFLELSYLNGVPEPSRG 283          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: KHDR1_HUMAN (KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.338e-19
Identity = 52/127 (40.94%), Postives = 78/127 (61.42%), Query Frame = 3
Query:  498 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLNQISEKIAG 872
            R+ IPV  YP FNFVG++LGP+GN++KR++  TG ++ + GKGS++D  KE++LR  G P Y HLN  LH+ IE   P       +  A E +++ L  V +  D I ++Q  E++ LN + E   G
Sbjct:  159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFL--VPDMMDDICQEQFLELSYLNGVPEPSRG 283          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: BBP_CANAL (Branchpoint-bridging protein OS=Candida albicans GN=BBP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.648e-18
Identity = 51/129 (39.53%), Postives = 80/129 (62.02%), Query Frame = 3
Query:  468 PSSYT--VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLN 848
            PS+Y    + + RL +PV  YP+ NFVG L+GPRGN+LK+++  +G R+ IRGKGS+K+    D          + D LH+LI AD P  I    ++   EII++L+ +  +  +++KR Q +E+A+LN
Sbjct:  139 PSNYRRPSRTVERLYVPVKDYPDINFVGFLIGPRGNTLKKLQEDSGARLQIRGKGSVKEGKSSDGFGSSQTGTDIQDDLHVLITADSPLKI-SKAVKLVNEIIDKLIFS-PQGMNFMKRDQLKELAVLN 265          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: BBP_DICDI (Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.925e-17
Identity = 67/209 (32.06%), Postives = 107/209 (51.20%), Query Frame = 3
Query:  225 QVLPICSRLLTQEIFRVSGMMPNQGFGDFDRLRHRSPSPMASSN-LMSNVAGTGLGGWNGLPQERLGGPPGMTMDWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLN 848
            Q+  +  RL   EI +   + P + F + DR R  SP P   +N   SN     +       + +L             P+       K+  ++ IP+  +P +NF+G ++GPRGN+ KR+E  +G ++ IRGKGS +D  K  KL+ +      ND LH+L+ AD     VD +L +A+ ++ E L  V+E ++  KRQQ RE+A +N
Sbjct:   91 QIAALILRLRVDEITKKITIGPIE-FTERDRERSPSPPPTYDNNGKRSNTREQRIKEKLQKERHQLVVTAQQINPTYKPPSDYQPPNEKKTRKIYIPIKNHPEYNFIGLIIGPRGNTQKRMEKESGAKIAIRGKGSSRD-GKPTKLQFQE-----NDELHVLLTAD----TVD-QLDKAEVLVREFLIPVEEGKNEHKRQQLRELAEMN 287          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: BBP_ASHGO (Branchpoint-bridging protein OS=Ashbya gossypii GN=BBP PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.925e-17
Identity = 48/114 (42.11%), Postives = 72/114 (63.16%), Query Frame = 3
Query:  507 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLN 848
            IP++ YP  NFVG LLGPRGN+LK+++  +GC++ IRG+GS+K+      L    G  ++N+PLH +I AD    I  + +   + II + + T  E Q+  KR Q RE+A+LN
Sbjct:  155 IPINDYPEINFVGLLLGPRGNTLKQLQQQSGCKIVIRGRGSVKEGKAATDL--PKGAMNMNEPLHCVISADTEEKI-PLGINAGESIIIKAI-TFPEGQNDFKRGQLRELAVLN 264          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: BBP_ASPFU (Branchpoint-bridging protein OS=Aspergillus fumigatus GN=bbp PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.543e-16
Identity = 52/147 (35.37%), Postives = 84/147 (57.14%), Query Frame = 3
Query:  468 PSSYT--VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLN---DPLHILIEADLPANIVDIRLRQAQEIIEELLKT---VDESQDYIKRQQXREVAMLNQISEKIAGAKCQ 884
            PS Y    K   ++ +PV+ YP  NF+G L+GPRGN+LK++EA +G ++ IRGKGS+K+       +GR    H +   + LH LI AD      + ++ +A++++  +++T   + E Q+ +KR Q RE+A LN          CQ
Sbjct:  172 PSDYRRPTKTQEKVYVPVNDYPEINFIGLLIGPRGNTLKKMEAESGAKIAIRGKGSVKEG------KGRSDAAHASNQEEDLHCLIMAD-----TEEKVNKAKKLVHNVIETAASIPEGQNELKRNQLRELAALNGTLRDDENQACQ 307          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: BBP_NEUCR (Branchpoint-bridging protein OS=Neurospora crassa GN=bpb-1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.437e-16
Identity = 52/147 (35.37%), Postives = 83/147 (56.46%), Query Frame = 3
Query:  468 PSSYT--VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLN---DPLHILIEADLPANIVDIRLRQAQEIIEELLKT---VDESQDYIKRQQXREVAMLNQISEKIAGAKCQ 884
            PS Y    K   ++ +PV+ YP  NF+G L+GPRGN+LK++E  +G ++ IRGKGS+K+       +GR    H +   + LH LI AD      + ++ +A+++I  +++T   + E Q+ +KR Q RE+A LN          CQ
Sbjct:  187 PSDYRRPTKTQEKVYVPVNDYPEINFIGLLIGPRGNTLKKMETESGAKIAIRGKGSVKEG------KGRSDAAHSSNQEEDLHCLIMAD-----TEEKVNKAKKLIHNIIETAASIPEGQNELKRNQLRELAALNGTLRDDENQACQ 322          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: BBP_CANGA (Branchpoint-bridging protein OS=Candida glabrata GN=BBP PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.489e-16
Identity = 72/227 (31.72%), Postives = 113/227 (49.78%), Query Frame = 3
Query:  201 HQKL-----GPFTQVLPICSRLLTQEIFRVSGMMPNQGFGDFDRLRHRSPSPMASSNLMSNVAGTGLGGWNGLPQERLGGPPGMTMDWQSA--PASPSSYTVKRILRLE----IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLN 848
            HQKL     GP T +  +C+      I  +S ++ +  F +    R+RSPSP      + +  G  +     L +++L       ++  S   P   +    KR    +    IPV  YP  NFVG LLGPRG +L++++  +GC++ IRG+GS+K+      L   PG    +DPLH LI AD    I +  ++  + I+ + + T  E Q+ +KR Q RE+A LN
Sbjct:   33 HQKLPTKISGPLT-LEQLCAYQHMFRIQEISSIIKSHSF-EVPNARNRSPSPPP----VYDAEGKRINTREQLYKKKLMNERFKLVEVVSKLIPGYSAPKDYKRPTTFQEKYYIPVSQYPQINFVGLLLGPRGKTLRKMQEDSGCKIAIRGRGSVKEGKTSSDL--PPGAMDFSDPLHCLIIADNEEKI-ENGIKACRNIVIKAV-TSPEGQNELKRGQLRELAELN 249          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: BBP_YEAST (Branchpoint-bridging protein OS=Saccharomyces cerevisiae GN=MSL5 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.656e-16
Identity = 48/114 (42.11%), Postives = 71/114 (62.28%), Query Frame = 3
Query:  507 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLN 848
            IPVD YP+ NFVG LLGPRG +L++++  + C++ IRG+GS+K+      L   PG  +  DPLH LI AD   + +   ++  Q I+ + + T  E Q+ +KR Q RE+A LN
Sbjct:  154 IPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDL--PPGAMNFEDPLHCLIIAD-SEDKIQKGIKVCQNIVIKAV-TSPEGQNDLKRGQLRELAELN 263          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: BBP_SCHPO (Branchpoint-bridging protein OS=Schizosaccharomyces pombe GN=bpb1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.800e-15
Identity = 52/146 (35.62%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  465 SPSSYT--VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYE-HLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKT---VDESQDYIKRQQXREVAMLNQISEKIAGAKCQ 884
            +PS Y    K   ++ +PV  YP  NF+G L+GPRG++LK +EA +G ++ IRGKGS+    KE K R  P    ++ + LH L+ AD      + ++  A ++I+ +++T   V E Q+ +KR Q R++A LN          CQ
Sbjct:  176 APSDYRRPAKTQEKVYVPVKDYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSV----KEGKGRSDPSVRGNMEEDLHCLVTAD-----SEDKINHAIKLIDNVIQTAASVPEGQNDLKRNQLRQLATLNGTLRDDENQVCQ 312          
The following BLAST results are available for this feature:
BLAST of EY661488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
KHDR1_MOUSE4.338e-1940.94KH domain-containing, RNA-binding, signal transduc... [more]
KHDR1_HUMAN4.338e-1940.94KH domain-containing, RNA-binding, signal transduc... [more]
BBP_CANAL1.648e-1839.53Branchpoint-bridging protein OS=Candida albicans G... [more]
BBP_DICDI6.925e-1732.06Branchpoint-bridging protein OS=Dictyostelium disc... [more]
BBP_ASHGO6.925e-1742.11Branchpoint-bridging protein OS=Ashbya gossypii GN... [more]
BBP_ASPFU1.543e-1635.37Branchpoint-bridging protein OS=Aspergillus fumiga... [more]
BBP_NEUCR3.437e-1635.37Branchpoint-bridging protein OS=Neurospora crassa ... [more]
BBP_CANGA4.489e-1631.72Branchpoint-bridging protein OS=Candida glabrata G... [more]
BBP_YEAST7.656e-1642.11Branchpoint-bridging protein OS=Saccharomyces cere... [more]
BBP_SCHPO3.800e-1535.62Branchpoint-bridging protein OS=Schizosaccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-F11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661488 ID=EY661488; Name=EY661488; organism=Citrus sinensis; type=EST; length=897bp
CACGCGTCCGCCCTTTTCCTTTCTTTAAGAATCCCATTCTTTTGTTTGTT
CTAAATCCTCTAAAAAAGCAAGACAGTCACAAAGCCATGTCAGGTTTGTA
TAATCCCAACTTCTCACCTGCAAGAGCTGCTTCTCCACAAATTAGAAGCA
CCCCAGATATTAATATTGACAGTCAATACTTGTCAGAGCTTTTAGCTGAG
CATCAAAAGCTAGGACCTTTCACACAGGTGCTTCCGATATGCAGCCGACT
GTTAACTCAAGAGATATTTCGGGTTTCTGGGATGATGCCCAATCAAGGAT
TTGGTGACTTTGACAGACTGCGGCATAGAAGCCCCAGCCCCATGGCTTCT
TCAAATCTTATGTCAAACGTTGCAGGTACAGGGTTAGGTGGCTGGAATGG
CCTACCTCAGGAGAGATTAGGTGGACCTCCTGGCATGACGATGGATTGGC
AAAGTGCACCTGCAAGCCCTAGTTCATATACAGTCAAGAGAATTTTGCGT
TTGGAAATTCCAGTGGATACTTATCCTAACTTCAATTTTGTTGGACGGCT
TCTTGGTCCAAGGGGCAATTCACTGAAACGGGTTGAAGCTACTACTGGCT
GCCGTGTGTACATTAGAGGGAAGGGCTCAATAAAGGATCCAGACAAGGAA
GATAAGCTAAGGGGAAGGCCAGGCTATGAGCATCTCAATGATCCACTTCA
CATCTTAATTGAGGCTGATTTACCTGCCAACATTGTTGATATCAGGCTGA
GACAGGCGCAGGAGATTATAGAAGAATTGCTGAAAACTGTGGATGAGTCA
CAAGATTATATTAAGAGGCAGCAGNTGCGTGAAGTGGCAATGCTGAATCA
AATTTCAGAGAAGATAGCCGGGGCCAAGTGCCAGTGTTTCTTCCGTC
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