EY661488

Overview
NameEY661488
Unique NameEY661488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: BBP_DEBHA (Branchpoint-bridging protein OS=Debaryomyces hansenii GN=BBP PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.886e-14
Identity = 51/142 (35.92%), Postives = 81/142 (57.04%), Query Frame = 3
Query:  465 SPSSYT--VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKD------PDKEDKLRGRPGYEHL------NDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLN 848
            SP  Y   VK   ++ IPV  YP+ NFVG LLGPRGN+L++++  +G R+ IRGKGS+KD       + +D       + +       ND LH++I +D  + I    ++   ++IE+ + +    Q+ +KR Q RE+A+LN
Sbjct:  152 SPIDYRKPVKTYEKIYIPVKDYPDINFVGLLLGPRGNTLRQLQEDSGARLAIRGKGSVKDGKSTSSNNDDDDSNSSLSFSNPNLNSSGNDDLHVVITSDSQSKIAK-AIKLTNQVIEKAISS-PVGQNDLKRGQLRELAILN 291          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: SF01_HUMAN (Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 4.201e-14
Identity = 46/119 (38.66%), Postives = 74/119 (62.18%), Query Frame = 3
Query:  498 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGR--PGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLN 848
            ++ IP D YP  NFVG L+GPRGN+LK +E     ++ IRGKGS+K+  K  +  G+  PG +   +PLH L+ A+   N V   + Q + I+++ ++T ++  D +++ Q RE+A LN
Sbjct:  139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKE-GKVGRKDGQMLPGED---EPLHALVTANTMEN-VKKAVEQIRNILKQGIETPEDQND-LRKMQLRELARLN 251          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: SF01_MOUSE (Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5)

HSP 1 Score: 77.411 bits (189), Expect = 1.222e-13
Identity = 45/119 (37.82%), Postives = 74/119 (62.18%), Query Frame = 3
Query:  498 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGR--PGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLN 848
            ++ IP D YP  NFVG L+GPRGN+LK +E     ++ IRGKGS+++  K  +  G+  PG +   +PLH L+ A+   N V   + Q + I+++ ++T ++  D +++ Q RE+A LN
Sbjct:  139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVEE-GKVGRKDGQMLPGED---EPLHALVTANTMEN-VKKAVEQIRNILKQGIETPEDQND-LRKMQLRELARLN 251          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: BBP_CRYNE (Branchpoint-bridging protein OS=Cryptococcus neoformans GN=BBP PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.723e-13
Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = 3
Query:  498 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGY--EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLNQISEKIAGAKCQ 884
            ++ IPV  +P  NF G L+GPRGNSLK++E  +G ++ IRGKGS+K+       +GR G   +   D LH LI AD   + V   +    ++IE    T +   D+ KR Q RE+A LN          CQ
Sbjct:  249 KVYIPVKEFPEINFFGLLVGPRGNSLKKMERESGAKISIRGKGSVKEG------KGRAGNFPQDEEDELHCLITAD-DESKVKTCVALINKVIETAASTPEGENDH-KRNQLRELASLNGTLRDDENQLCQ 371          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: BBP_YARLI (Branchpoint-bridging protein OS=Yarrowia lipolytica GN=BBP PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.645e-13
Identity = 42/117 (35.90%), Postives = 71/117 (60.68%), Query Frame = 3
Query:  507 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKT---VDESQDYIKRQQXREVAMLN 848
            IPV+ YP+ NF+G+LLG RG +LK++E  +G ++ IRG+GS+K       +   P      D LH LI ++      + ++ +A +++++++ T   V E Q+ +KR Q RE+A LN
Sbjct:  185 IPVNEYPDINFIGQLLGARGKTLKKMEQESGAKICIRGRGSVKQGKGRTDI---PFQSTAEDDLHCLIISE-----DEEKIARAVQLVQQVIDTAASVPEGQNELKRSQLRELAALN 293          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: GRP33_ARTSA (Glycine-rich protein GRP33 OS=Artemia salina PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.765e-12
Identity = 41/112 (36.61%), Postives = 70/112 (62.50%), Query Frame = 3
Query:  483 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYI 812
            VK + R  +PVD +P +NF+G+LLGP G+++K+++  T  ++ I G+GS++D +KE++LR  G   Y HLN+ LHI I +         R+  A   I++ + T +E  +Y+
Sbjct:   72 VKLVSRCCLPVDQFPKYNFLGKLLGPGGSTMKQLQDETMTKISILGRGSMRDRNKEEELRNSGDVKYAHLNEQLHIEIISIASPAEAHARMAYALTEIKKYI-TPEEDPNYM 182          
BLAST of EY661488 vs. ExPASy Swiss-Prot
Match: BBP_USTMA (Branchpoint-bridging protein OS=Ustilago maydis GN=BBP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.952e-11
Identity = 44/132 (33.33%), Postives = 72/132 (54.55%), Query Frame = 3
Query:  468 PSSY-TVKRILR----LEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKTVDESQDYIKRQQXREVAMLN 848
            PS Y  +KR  R    + +P+  +P   F G L+GPRGN+LK +E  +G ++ IRGKGS+K        +G+   +   + +H ++ AD  A++    ++   ++IE    T +   D+ KR Q RE+A LN
Sbjct:  236 PSDYHAIKRNQRPTEKVYLPIKEFPEIKFFGLLVGPRGNTLKTMERQSGAKISIRGKGSVKTG------KGKMDADEDEEEMHCVVTADDEASVKKC-IKLINQVIETAASTPEGENDH-KRNQLRELAALN 359          
The following BLAST results are available for this feature:
BLAST of EY661488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
BBP_DEBHA1.886e-1435.92Branchpoint-bridging protein OS=Debaryomyces hanse... [more]
SF01_HUMAN4.201e-1438.66Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4[more]
SF01_MOUSE1.222e-1337.82Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=5[more]
BBP_CRYNE2.723e-1338.17Branchpoint-bridging protein OS=Cryptococcus neofo... [more]
BBP_YARLI4.645e-1335.90Branchpoint-bridging protein OS=Yarrowia lipolytic... [more]
GRP33_ARTSA1.765e-1236.61Glycine-rich protein GRP33 OS=Artemia salina PE=2 ... [more]
BBP_USTMA1.952e-1133.33Branchpoint-bridging protein OS=Ustilago maydis GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-F11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661488 ID=EY661488; Name=EY661488; organism=Citrus sinensis; type=EST; length=897bp
CACGCGTCCGCCCTTTTCCTTTCTTTAAGAATCCCATTCTTTTGTTTGTT
CTAAATCCTCTAAAAAAGCAAGACAGTCACAAAGCCATGTCAGGTTTGTA
TAATCCCAACTTCTCACCTGCAAGAGCTGCTTCTCCACAAATTAGAAGCA
CCCCAGATATTAATATTGACAGTCAATACTTGTCAGAGCTTTTAGCTGAG
CATCAAAAGCTAGGACCTTTCACACAGGTGCTTCCGATATGCAGCCGACT
GTTAACTCAAGAGATATTTCGGGTTTCTGGGATGATGCCCAATCAAGGAT
TTGGTGACTTTGACAGACTGCGGCATAGAAGCCCCAGCCCCATGGCTTCT
TCAAATCTTATGTCAAACGTTGCAGGTACAGGGTTAGGTGGCTGGAATGG
CCTACCTCAGGAGAGATTAGGTGGACCTCCTGGCATGACGATGGATTGGC
AAAGTGCACCTGCAAGCCCTAGTTCATATACAGTCAAGAGAATTTTGCGT
TTGGAAATTCCAGTGGATACTTATCCTAACTTCAATTTTGTTGGACGGCT
TCTTGGTCCAAGGGGCAATTCACTGAAACGGGTTGAAGCTACTACTGGCT
GCCGTGTGTACATTAGAGGGAAGGGCTCAATAAAGGATCCAGACAAGGAA
GATAAGCTAAGGGGAAGGCCAGGCTATGAGCATCTCAATGATCCACTTCA
CATCTTAATTGAGGCTGATTTACCTGCCAACATTGTTGATATCAGGCTGA
GACAGGCGCAGGAGATTATAGAAGAATTGCTGAAAACTGTGGATGAGTCA
CAAGATTATATTAAGAGGCAGCAGNTGCGTGAAGTGGCAATGCTGAATCA
AATTTCAGAGAAGATAGCCGGGGCCAAGTGCCAGTGTTTCTTCCGTC
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