EY661487

Overview
NameEY661487
Unique NameEY661487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PP421_ARATH (Pentatricopeptide repeat-containing protein At5g46680 OS=Arabidopsis thaliana GN=At5g46680 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 44/160 (27.50%), Postives = 80/160 (50.00%), Query Frame = 3
Query:   18 LCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQ-LYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQT 494
            LC   ++ +A   L+  +   V+P+   +N +I GY R   +  A+++   M   G+  +V T+N+LI    +   +     L  EML  G+ PD+++YN L+     LG    A + L++++   G+ P I TY  L+   C  G+   A E+F  +++
Sbjct:   23 LCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNAIELFKHLKS 182          

HSP 2 Score: 72.4034 bits (176), Expect = 3.954e-12
Identity = 45/176 (25.57%), Postives = 87/176 (49.43%), Query Frame = 3
Query:   66 MLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFS-LKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRTMKESHKARDIHQK 590
            M E  + P+   +N +I G  +   L+    + D ML  G+S +++++N L+    + G   +AF  L +++ L G+ P + TYN+L+ A C  GH   A++L+  +  R + P+++TY  LI G C    +   + +  +++  G   + + +  + K Y   K   K   +  K
Sbjct:   74 MREAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNAIELFKHLKSR-VKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLK 248          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PP413_ARATH (Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 46/157 (29.30%), Postives = 72/157 (45.86%), Query Frame = 3
Query:   30 GDIVKAREFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 500
            G +  A   +  M ++ V P+ H ++++I  Y   G   +A  +   M +  V  N F F+ L+      G     F + KEM   G+ PD   YN++I        +  A+  +D ML  GI PD +T+  LI  HC  G    AEE+F  ++  G
Sbjct:  353 GPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRG 509          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PP380_ARATH (Pentatricopeptide repeat-containing protein At5g14080 OS=Arabidopsis thaliana GN=At5g14080 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 52/161 (32.30%), Postives = 81/161 (50.31%), Query Frame = 3
Query:   12 QGLCIHGD---IVKAREFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAK 485
            + LC H     ++KA E L S   K    E   ++++I    + G +  +++    M   G++ +V  +NALI A  +   I  A  L  EM ++G   ++ TYN+LI      G    +L+L+D+ML RGI PD   Y  LI+G C    ++ A EVF K
Sbjct:  370 KNLCRHDKSDHLIKAYELLSS---KGYFSELQSYSLMISFLCKAGRVRESYTALQEMKKEGLAPDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSEEGEAEESLRLFDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEVFRK 527          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PP241_ARATH (Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 44/174 (25.29%), Postives = 87/174 (50.00%), Query Frame = 3
Query:   30 GDIVKAREFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSN--AFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRY 545
            G   KA+E + +M ++  VP+   +N +I    + G L+   A  + D++ + G+  +  T+N L+ A +R  ++  A  + ++M      PD++TYN +I      G    A +L+ E+  +G  PD +TY  L+       N ++ +EV+ ++Q +G   D + +  +   Y
Sbjct:  239 GKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMY 412          

HSP 2 Score: 71.633 bits (174), Expect = 6.744e-12
Identity = 45/183 (24.59%), Postives = 88/183 (48.09%), Query Frame = 3
Query:   57 LLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLD-----GIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRTMKESHKARDIHQK 590
            + +  E +V     ++N ++  Y R G  S A  + D M   G   ++ +FN LI A  + G +    +++   LLD     G+ PD  TYN L+ A     ++  A++++++M      PD+ TY  +I  +   G   EAE +F +++  G   D + +  L   +   + + K ++++Q+
Sbjct:  213 IFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVE---LLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQ 392          

HSP 3 Score: 68.9366 bits (167), Expect = 4.371e-11
Identity = 48/187 (25.67%), Postives = 82/187 (43.85%), Query Frame = 3
Query:   30 GDIVKAREFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEML-LDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRTMKESHKARDIHQ 587
            G   +A    + +  K   P+   +N ++Y + R  +      +   M   G   +  T+N +I    + G +  A  L K+M  L G  PD  TY +LI +         A  L  EML  GI P + TY+ LI G+   G  +EAE+ F+ +   G   D++ + ++        E+ KA  +++
Sbjct:  346 GLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYR 532          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PP447_ARATH (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.808e-12
Identity = 39/164 (23.78%), Postives = 83/164 (50.61%), Query Frame = 3
Query:   12 QGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGL 503
            Q LC    + +A +  + M       +   +  ++ G+ + G +   + + D M+  G+  +  T+  +++A  +  S  +   L ++M      PD+  YN++I  +C LG +  A++L++EM   G++P + T+  +I G  ++G + EA + F ++ T GL
Sbjct:  330 QALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGL 493          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PP236_ARATH (Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.808e-12
Identity = 41/160 (25.62%), Postives = 79/160 (49.38%), Query Frame = 3
Query:   45 AREFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPF 524
            A E    + E        ++ V+I  +G+CG LS A  + + M + G   +V+ +NAL+    + G I +A SL ++M  +G   D+ ++N+++      G    A+++++ +   GI PD +TY  L+      G  +EA  +  +++  G   D I +
Sbjct:  463 ANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITY 622          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PP217_ARATH (Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.808e-12
Identity = 40/137 (29.20%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  105 NVIIY-----GYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 500
            NV+IY     G+G+ G +  A+ I + ++  G++ N++T+N+L+ A  +   I +A    + M      P+  TY +LI   C +   + A   + EM ++G+ P  I+YT +I G    GN+ EA  +F + +  G
Sbjct:  656 NVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792          

HSP 2 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 47/195 (24.10%), Postives = 95/195 (48.72%), Query Frame = 3
Query:    6 RPQGLCIHGDIVKAR------EFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRTMKESHKA 572
            R   + IHG ++KA       E   SM E+  V +   +N++I G+ +CG ++ A+ + + M + G    V T+ ++I    +   + +A+ L +E     I  +V  Y+ LI     +G I  A  + +E++++G+TP++ T+  L+        + EA   F  ++ L    + + + IL      +++ +KA
Sbjct:  553 RSYSILIHG-LIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKA 746          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PPR40_ARATH (Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 43/164 (26.22%), Postives = 79/164 (48.17%), Query Frame = 3
Query:   42 KAREFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRIL 533
            K   F++  +E     +   ++ +I  + R  +   A+ + + M   G+  NV T+ +LI A  R G+   A  L  +M   G+ PD   Y  ++   C  G++  A  ++++M+   ITPD I+Y  LI G C  G + EA ++F  ++      D + F+ +
Sbjct:  308 KCYNFMVKEMEPRGFCDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFI 471          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PP288_ARATH (Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.502e-11
Identity = 40/145 (27.59%), Postives = 68/145 (46.90%), Query Frame = 3
Query:   66 MLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 500
            MLE    P+   +N++++   R G +     + D M   G S + +T+N L+    +G     A +    M   GI P V  Y  LI      G++       DEM++ G  PD++ YT +I G+   G + +A+E+F ++   G
Sbjct:  245 MLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKG 389          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PPR79_ARATH (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.563e-11
Identity = 47/174 (27.01%), Postives = 83/174 (47.70%), Query Frame = 3
Query:   15 GLCIHGDIVKAREFLLSMLEK-SVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRIL 533
            GLC    + +A +    ML+   V P  HI+  +I    + G+LS AF ++D      +  +   ++ LI +  + G   +   + +EM   G  PD  TYN+LI   C       A ++ DEM+ +G+ PD+I+Y  ++         +EA  +F  +   G + D + +RI+
Sbjct:  196 GLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIV 369          
The following BLAST results are available for this feature:
BLAST of EY661487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PP421_ARATH2.318e-1227.50Pentatricopeptide repeat-containing protein At5g46... [more]
PP413_ARATH2.318e-1229.30Pentatricopeptide repeat-containing protein At5g42... [more]
PP380_ARATH5.164e-1232.30Pentatricopeptide repeat-containing protein At5g14... [more]
PP241_ARATH5.164e-1225.29Pentatricopeptide repeat-containing protein At3g18... [more]
PP447_ARATH8.808e-1223.78Putative pentatricopeptide repeat-containing prote... [more]
PP236_ARATH8.808e-1225.63Pentatricopeptide repeat-containing protein At3g16... [more]
PP217_ARATH8.808e-1229.20Pentatricopeptide repeat-containing protein At3g06... [more]
PPR40_ARATH1.150e-1126.22Pentatricopeptide repeat-containing protein At1g13... [more]
PP288_ARATH1.502e-1127.59Pentatricopeptide repeat-containing protein At3g60... [more]
PPR79_ARATH2.563e-1127.01Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661487 ID=EY661487; Name=EY661487; organism=Citrus sinensis; type=EST; length=899bp
CCACGCGTCCGCAAGGTCTCTGTATTCATGGGGACATTGTTAAGGCTAGG
GAATTTCTGCTTTCTATGTTAGAGAAGTCGGTGGTGCCTGAGCCTCATAT
ATGGAACGTGATAATTTATGGTTATGGAAGATGTGGAGATCTCAGTAATG
CATTCTCTATTAGAGACCTAATGCTGTCTTTTGGCGTTTCATCAAATGTG
TTTACCTTTAATGCGCTAATTCTTGCAGAAACAAGAGGTGGAAGTATTTT
CGATGCGTTTTCTCTGAAAAAGGAGATGCTTTTAGATGGCATTTTTCCTG
ATGTATTTACTTATAATTTATTAATAGGCGCTTCTTGTAATTTGGGGCAT
ATTCATTTGGCGCTTCAATTATATGATGAAATGCTGCGTAGGGGAATCAC
GCCTGATATAATAACTTATACTGAATTAATTAAAGGTCATTGTGCTAGAG
GTAACATGAAGGAGGCAGAGGAGGTTTTTGCCAAGATACAAACATTAGGT
TTAGCCATTGATCACATTCCATTTCGGATACTTAAGAAGAGATATCGCAC
AATGAAGGAATCACACAAGGCACGGGACATACATCAAAAGTGGTTGTTGA
GGAACAAATGAGCTTTTCCACTTCAATAAGCTATAAATATGCATATACAT
GATGGAATTCGTGGTTGTCGAAAACAGGGCCTGACACTTGTGAGTTGTAG
TTCTTGTTTTGAGCCTTAACAAATTCTTTAAGATGGTGACAGGTTTCTAG
ATTGCGGGACTTGCAAATGCTCTTCGACAGTGATCTCTTTGTTATCAGCG
GAAACTCACGAGCAAGAAGATGTCCCAGATCATATATGAGAACCCATCTG
AGGGAGTATGGGATACCTTCCGTGTTGAGGTTTTCCATTTAGCTGGAGA
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