EY661487

Overview
NameEY661487
Unique NameEY661487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PP397_ARATH (Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.563e-11
Identity = 48/191 (25.13%), Postives = 88/191 (46.07%), Query Frame = 3
Query:   15 GLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRTMKESHKARDIHQ 587
            G C  G +     F+  M E  V     ++N +I G+    D      +  LM    V ++V T++ ++ A +  G +  A  + KEM+  G+ PD   Y++L            A +L + ++     P+++ +T +I G C+ G+M +A  VF K+   G++ +   F  L   Y  +K+  KA ++ Q
Sbjct:  269 GYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDRDGIDEVLTLMKECNVKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKPDAHAYSILAKGYVRAKGPKKAEELLETLIVES-RPNVVIFTTVISGWCSNGSMDDAMRVFNKMCKFGVSPNIKTFETLMWGYLEVKQPWKAEEVLQ 458          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PP287_ARATH (Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.563e-11
Identity = 41/146 (28.08%), Postives = 73/146 (50.00%), Query Frame = 3
Query:   66 MLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGL 503
            M    + P+   + ++I  YGR      A S+ + ML  GV      +N L+ A    G +  A ++ K M  D IFPD+++Y  ++ A  N   +  A + +  +   G  P+I+TY  LIKG+    ++++  EV+ K++  G+
Sbjct:  305 MQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGI 450          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PPR46_ARATH (Putative pentatricopeptide repeat-containing protein At1g16830 OS=Arabidopsis thaliana GN=At1g16830 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.347e-11
Identity = 43/152 (28.29%), Postives = 75/152 (49.34%), Query Frame = 3
Query:  126 GRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRTMKESHKARDI 581
            G  GDL     +   M+  G   N   F  ++    R G + +AF +   M+  GI   V  +++L+      G    A+ L+++M++ G +P+++TYT LIKG    G + EA  V +K+Q+ GLA D +   ++   Y  +    +AR +
Sbjct:  188 GGRGDLVGVKIVLKRMIGEGFYPNRERFGQILRLCCRTGCVSEAFQVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKV 339          

HSP 2 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 34/144 (23.61%), Postives = 73/144 (50.69%), Query Frame = 3
Query:   21 CIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARG 452
            C  G + +A + +  M+   +    ++W++++ G+ R G+   A  + + M+  G S N+ T+ +LI      G + +AF++  ++  +G+ PD+   NL+I     LG    A +++  + +R + PD  T+  ++   C  G
Sbjct:  223 CRTGCVSEAFQVVGLMICSGISVSVNVWSMLVSGFFRSGEPQKAVDLFNKMIQIGCSPNLVTYTSLIKGFVDLGMVDEAFTVLSKVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRKLVPDQYTFASILSSLCLSG 366          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PP443_ARATH (Pentatricopeptide repeat-containing protein At5g62370 OS=Arabidopsis thaliana GN=At5g62370 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.347e-11
Identity = 51/189 (26.98%), Postives = 86/189 (45.50%), Query Frame = 3
Query:   18 LCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPF-RILKKRYRTMKESHKARDI 581
            LC   D   A   + +M E  + P   I++ II   G+ G +  A      ML  G+  +   +  +I    R G I +A  L +E++   + P  FTY +LI     +G +    Q  D+ML  G++P+++ YT LI     +G+ K +  +F  +    +  DHI +  +L   +R M    K + I
Sbjct:  557 LCKKNDRDAAFAIIDAMEELGLRPTVAIYSSIIGSLGKQGRVVEAEETFAKMLESGIQPDEIAYMIMINTYARNGRIDEANELVEEVVKHFLRPSSFTYTVLISGFVKMGMMEKGCQYLDKMLEDGLSPNVVLYTALIGHFLKKGDFKFSFTLFGLMGENDIKHDHIAYITLLSGLWRAMARKKKRQVI 745          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PP161_ARATH (Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.347e-11
Identity = 45/167 (26.95%), Postives = 78/167 (46.71%), Query Frame = 3
Query:   87 PEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRTMKESHKARDIHQ 587
            P+  ++N I+ G+      S A  +   M   GV  +  T+N LI   ++ G + +A    K M+  G  PD  TY  L+   C  G    AL L +EM  RG  P+  TY  L+ G C    M +  E++  +++ G+ ++   +  L    R++ +S K  + ++
Sbjct:  263 PDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATL---VRSLVKSGKVAEAYE 426          

HSP 2 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 43/153 (28.10%), Postives = 73/153 (47.71%), Query Frame = 3
Query:   12 QGLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLS-FGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEA 467
            + LC  G + +A++ +  + EK   P+ + +N ++    +C DL   +   D M   F V  ++ +F  LI       ++ +A  L  ++   G  PD F YN ++   C L     A+ +Y +M   G+ PD ITY  LI G    G ++EA
Sbjct:  167 RSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEA 319          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PP107_ARATH (Pentatricopeptide repeat-containing protein At1g66345, mitochondrial OS=Arabidopsis thaliana GN=At1g66345 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.347e-11
Identity = 43/159 (27.04%), Postives = 73/159 (45.91%), Query Frame = 3
Query:   36 IVKAREFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAID 512
            I ++   L  +L K++V +   +++++Y   + GDL +A  + D ML  G S+N F +   +      G + +A  L  EM   G+ P   T+N LIG     G     L+  + M+ RG+ P    + E++K      N+  A E+  K    G   D
Sbjct:  285 IEESMSLLKRLLMKNMVVDTIGYSIVVYAKAKEGDLVSARKVFDEMLQRGFSANSFVYTVFVRVCCEKGDVKEAERLLSEMEESGVSPYDETFNCLIGGFARFGWEEKGLEYCEVMVTRGLMPSCSAFNEMVKSVSKIENVNRANEILTKSIDKGFVPD 443          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PPR34_ARATH (Pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Arabidopsis thaliana GN=At1g11710 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.371e-11
Identity = 47/185 (25.41%), Postives = 84/185 (45.41%), Query Frame = 3
Query:   27 HGDIVKAREFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEM-LRRG--ITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRTMKESHKA 572
            +GD   A E +     +      H  N  +       ++   + +   M S G   NV TFN +I +  +   +F+A S+   ML  G++P+V ++N++I  +C  G +  ALQL  +M +  G  ++P+ +TY  +I G C  G +  AE +   +   G+  +   +  L   Y     S +A
Sbjct:  161 NGDAQGAYEVIEQTRAEGFCVSVHALNNFMGCLLNVNEIDRFWKVYKEMDSLGYVENVNTFNLVIYSFCKESKLFEALSVFYRMLKCGVWPNVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNSVINGFCKAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEA 345          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PP130_ARATH (Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 47/170 (27.65%), Postives = 77/170 (45.29%), Query Frame = 3
Query:   30 GDIVKAREFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLML--SFGVSSNVFTFNALILAETRGGS-----------IFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLG 500
            G + +A      M E    P+ + +N II    R G+   A  + D M    F    + +T+  LI +  R G            +++A  + +EML  G  PDV TYN LI   C    I  AL+L+++M  +G  P+ +TY   I+ +     ++ A E+   ++ LG
Sbjct:  179 GFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLG 348          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 49/197 (24.87%), Postives = 90/197 (45.69%), Query Frame = 3
Query:   15 GLCIHGDIVKAREFLLSMLEKSVVPEPHIWNVIIYGYGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRILKKRYRTMKESHKARDIHQKWLLRN 605
            G  IHG I++ + +           + ++   +I  Y + G L  A  + D+M     + N+  +N+L+   +    + DA +L   M  +GI PD  T+N L      LG    AL +  +M  +G+ P+++++T +  G    GN + A +VF K+Q  G+  +      L K    +   H  +++H   L +N
Sbjct:  244 GKAIHGYILRNQLWY----------DVYVETTLIDMYIKTGYLPYARMVFDMM----DAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKN 426          
BLAST of EY661487 vs. ExPASy Swiss-Prot
Match: PP139_ARATH (Pentatricopeptide repeat-containing protein At2g01390 OS=Arabidopsis thaliana GN=At2g01390/At2g01380 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 42/137 (30.66%), Postives = 70/137 (51.09%), Query Frame = 3
Query:  123 YGRCGDLSNAFSIRDLMLSFGVSSNVFTFNALILAETRGGSIFDAFSLKKEMLLDGIFPDVFTYNLLIGASCNLGHIHLALQLYDEMLRRGITPDIITYTELIKGHCARGNMKEAEEVFAKIQTLGLAIDHIPFRIL 533
            +G  G + + +S+  LM   GV  +  T+ +LI   +  G +  A  L +EM  +G  P V +Y   +      G +  A ++Y EMLR  ++P+  TYT L++   A G  +EA ++F K+Q +G+  D     IL
Sbjct:  132 FGEAGRIQSMYSVFHLMKEKGVLIDTVTYTSLIHWVSSSGDVDGAMRLWEEMRDNGCEPTVVSYTAYMKMLFADGRVEEATEVYKEMLRSRVSPNCHTYTVLMEYLVATGKCEEALDIFFKMQEIGVQPDKAACNIL 268          
The following BLAST results are available for this feature:
BLAST of EY661487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PP397_ARATH2.563e-1125.13Pentatricopeptide repeat-containing protein At5g25... [more]
PP287_ARATH2.563e-1128.08Pentatricopeptide repeat-containing protein At3g59... [more]
PPR46_ARATH3.347e-1128.29Putative pentatricopeptide repeat-containing prote... [more]
PP443_ARATH3.347e-1126.98Pentatricopeptide repeat-containing protein At5g62... [more]
PP161_ARATH3.347e-1126.95Pentatricopeptide repeat-containing protein At2g17... [more]
PP107_ARATH3.347e-1127.04Pentatricopeptide repeat-containing protein At1g66... [more]
PPR34_ARATH4.371e-1125.41Pentatricopeptide repeat-containing protein At1g11... [more]
PP130_ARATH7.457e-1127.65Pentatricopeptide repeat-containing protein At1g77... [more]
PP297_ARATH9.739e-1124.87Pentatricopeptide repeat-containing protein At4g01... [more]
PP139_ARATH9.739e-1130.66Pentatricopeptide repeat-containing protein At2g01... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661487 ID=EY661487; Name=EY661487; organism=Citrus sinensis; type=EST; length=899bp
CCACGCGTCCGCAAGGTCTCTGTATTCATGGGGACATTGTTAAGGCTAGG
GAATTTCTGCTTTCTATGTTAGAGAAGTCGGTGGTGCCTGAGCCTCATAT
ATGGAACGTGATAATTTATGGTTATGGAAGATGTGGAGATCTCAGTAATG
CATTCTCTATTAGAGACCTAATGCTGTCTTTTGGCGTTTCATCAAATGTG
TTTACCTTTAATGCGCTAATTCTTGCAGAAACAAGAGGTGGAAGTATTTT
CGATGCGTTTTCTCTGAAAAAGGAGATGCTTTTAGATGGCATTTTTCCTG
ATGTATTTACTTATAATTTATTAATAGGCGCTTCTTGTAATTTGGGGCAT
ATTCATTTGGCGCTTCAATTATATGATGAAATGCTGCGTAGGGGAATCAC
GCCTGATATAATAACTTATACTGAATTAATTAAAGGTCATTGTGCTAGAG
GTAACATGAAGGAGGCAGAGGAGGTTTTTGCCAAGATACAAACATTAGGT
TTAGCCATTGATCACATTCCATTTCGGATACTTAAGAAGAGATATCGCAC
AATGAAGGAATCACACAAGGCACGGGACATACATCAAAAGTGGTTGTTGA
GGAACAAATGAGCTTTTCCACTTCAATAAGCTATAAATATGCATATACAT
GATGGAATTCGTGGTTGTCGAAAACAGGGCCTGACACTTGTGAGTTGTAG
TTCTTGTTTTGAGCCTTAACAAATTCTTTAAGATGGTGACAGGTTTCTAG
ATTGCGGGACTTGCAAATGCTCTTCGACAGTGATCTCTTTGTTATCAGCG
GAAACTCACGAGCAAGAAGATGTCCCAGATCATATATGAGAACCCATCTG
AGGGAGTATGGGATACCTTCCGTGTTGAGGTTTTCCATTTAGCTGGAGA
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