EY661486

Overview
NameEY661486
Unique NameEY661486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.674e-23
Identity = 47/108 (43.52%), Postives = 75/108 (69.44%), Query Frame = 2
Query:  392 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 715
            G+V+  H+  ++  KL AA  + +L+++ FTA WC PCRFI+P+F  LA K+  VVF KVD+DE   VA  +++ ++PTF ++K  +++DKVVGA K  +E K+ +H+
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHS 118          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.855e-23
Identity = 45/109 (41.28%), Postives = 73/109 (66.97%), Query Frame = 2
Query:  392 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 718
            G+V+  H+   +  K+  A  + +L+++ FTA+WC PCRFI+P+F  +A K+T VVF K+D+DE + VA  + + ++PTF F+K G  +D+VVGA K  +  K+ +H G
Sbjct:    5 GEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKHGG 113          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.729e-23
Identity = 49/110 (44.55%), Postives = 77/110 (70.00%), Query Frame = 2
Query:  392 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKY-TKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 718
            GQV+G H+   +  +L+ A  + +L+++ FTA+WC PCR I+P+F +LA K+ +  +F KVD+DE + VA  + + ++PTF FIK G+ VDK+VGA+K  L+ KI +H G
Sbjct:    6 GQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTG 115          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.850e-22
Identity = 49/110 (44.55%), Postives = 75/110 (68.18%), Query Frame = 2
Query:  392 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKY-TKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 718
            GQV+G H    +  +L+ A ++ +L+++ FTA+WC PCR I+P+F +LA K+ +  +F KVD+DE ++VA  + + ++PTF  IK+G  VDKVVGA K  L   IA+H G
Sbjct:    6 GQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTG 115          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.122e-22
Identity = 45/106 (42.45%), Postives = 74/106 (69.81%), Query Frame = 2
Query:  386 STGQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 703
            S G V  I +   ++ KL  A R  ++V+  F+ATWCGPC+ ++P F  L+ K++ ++FL VD+DE  D ++ W+I + PTFFF+KNG+++ K+VGA+K  L++K+
Sbjct:   21 SGGNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.384e-22
Identity = 46/107 (42.99%), Postives = 71/107 (66.36%), Query Frame = 2
Query:  395 QVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 715
            QV+  H+  E+  K   A  + +L+++ FTA+WCGPCR I+P  + LA K+  V F KVD+D+ +DVA  + + ++P+F  +K G+EV+++VGA K  L  KIA HA
Sbjct:    6 QVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVHA 112          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.032e-22
Identity = 46/107 (42.99%), Postives = 71/107 (66.36%), Query Frame = 2
Query:  392 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 712
            G+V+  H+  ++  KL AA  + +L+++ FTATWC PCRFI+P+F +LA K+  VVF KVD+DE   VA  + + ++PTF F+K G+  + VVGA K  +   + +H
Sbjct:    5 GEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKH 111          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.954e-20
Identity = 43/104 (41.35%), Postives = 70/104 (67.31%), Query Frame = 2
Query:  392 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 703
            G V  I +   ++ KL+ A+R  ++V+  F+A WCGPC+ I+P +  L+  Y  ++FL +D+DE  D +  W I + PTFFF+++G++VDK+VGA+K  L +KI
Sbjct:   24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.954e-20
Identity = 44/86 (51.16%), Postives = 61/86 (70.93%), Query Frame = 2
Query:  455 ALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 712
            A RL+I+ F A WCGPCR ISP+F   +++Y    FLKV+ D ARD+  R+NI ++PTF F+KN ++VD V GA++ A+  KI QH
Sbjct:   21 ANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQH 106          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.858e-20
Identity = 46/102 (45.10%), Postives = 70/102 (68.63%), Query Frame = 2
Query:  398 VMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKI 703
            V  + + ++FE +L AA    +LV++ F+ATWCGPC+ I P F +L  K+  VVF+++D+D+A+DVAT  ++  +PTF F KNGK+V +  GA+K  LE  I
Sbjct:    2 VKSVGNLADFEAELKAAGE--KLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETI 101          
The following BLAST results are available for this feature:
BLAST of EY661486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
TRXH1_BRANA1.674e-2343.52Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH5_ARATH2.855e-2341.28Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH4_ARATH3.729e-2344.55Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_BRANA1.850e-2244.55Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH9_ARATH4.122e-2242.45Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_FAGES5.384e-2242.99Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH3_ARATH7.032e-2242.99Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_POPJC2.954e-2041.35Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
NGLY1_CAEEL2.954e-2051.16Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIO_CHICK3.858e-2045.10Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661486 ID=EY661486; Name=EY661486; organism=Citrus sinensis; type=EST; length=886bp
CAGATATTAAATCTTCCTACAAATTTTACTTGTTAGAAATTTCTCTACTA
CTGTTACTTTTGTTTTCAACAATCATTTTTTTTGTCTTTCTCTTGTCCAT
AATCATTTGTTCTTGTGGTTATTTTTTTCTGGGGCAGTTCAAATTTTTCA
CAAGTTCTCCTTAGAAGAGCTGTCAATGTTTCTGACCTTTGTTATGTTGG
AACAGACTGAGGATTCCAGGCCTTCTAATGTTTGGATTTTTACTATTAAT
CTTCTCAGGCTTTTATTTGTTTAATAATCTCTTAATCTCTCCATTTTAGA
GCTATTGATGTCTAAAGTAGATAGGTATATTCATGGTGTTCCTATGATGA
TTTCCCTGTTGTGTATCTTGTTACATTTTTGGTGATCCACAGGGCAAGTA
ATGGGTATTCACTCAGCTAGTGAATTTGAAACTAAGTTGAATGCTGCTAC
TAGAGCATTGCGCCTGGTGATTCTGTACTTTACTGCAACATGGTGCGGGC
CCTGCCGTTTCATTTCTCCTCTTTTTACAAACTTAGCCTCAAAATACACG
AAGGTTGTTTTCTTGAAAGTTGACATAGATGAGGCAAGAGATGTAGCTAC
ACGCTGGAATATTGGTTCTGTTCCCACCTTTTTCTTCATAAAGAATGGTA
AGGAAGTTGACAAGGTTGTCGGGGCTGATAAAAGTGCACTTGAAAGGAAG
ATTGCACAACATGCTGGCCAGTAAAACCACTCCTGAATAATGAGAACTTT
AGAGTAATCTCTGCTTGCAAGCCTTTCCTACCCATTTGTTTGCAAGCAAA
TAATGTCTGANTAAATTCAGTATTTGAATAAAATAACTTGCTCCAAAATT
ATCNNTCATTCTTGCTATGNTTACCGAGTAAAGAAT
back to top