EY661486

Overview
NameEY661486
Unique NameEY661486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: GLRX3_HUMAN (Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 33/103 (32.04%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  407 IHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 715
            + SA +FE  L    +A  L++++F A W   C  ++ +   LA +  +V F+K++ +   +V+ ++ I SVPTF F KN +++D++ GA    L +K+ +HA
Sbjct:   16 VGSAGQFEELLRL--KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHA 116          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.294e-11
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 2
Query:  467 VILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA 676
            V++ F A WCGPCR I+P+   LA +Y  K+   KV+ D++ ++AT + I S+PT    KNG++ + V+GA
Sbjct:   86 VLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGA 156          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  413 SASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGA-DKSALERKI 703
            S SE++TK+  +      V++ F A WCGPCR I P+   LA  +  K  F K++ DE+ + A R+ I SVPT    K G++ D ++GA  +  LE+ I
Sbjct:   92 SDSEWQTKVLESDVP---VLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTI 187          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  479 FTATWCGPCRFISPLFTNLASKYT-KVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG 673
            F ATWCGPC+ I+P+   LA  Y  K   LK+D+DE    A ++ + S+PT    K+G+ VDKVVG
Sbjct:   24 FWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVG 89          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 2
Query:  467 VILYFTATWCGPCRFISPLFTNLASK-YTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVG-ADKSALE 694
            V++ F A WCGPC+ + P    + +K + KVV  KVDID+  D+A  + + +VPT   +KNG  VDK VG  D+  LE
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLE 158          
The following BLAST results are available for this feature:
BLAST of EY661486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
GLRX3_HUMAN5.585e-1132.04Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2[more]
TRXM_ORYSJ7.294e-1142.25Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
TRXM4_ARATH9.526e-1138.38Thioredoxin M-type 4, chloroplastic OS=Arabidopsis... [more]
THIO_STAHJ9.526e-1146.97Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIOM_HUMAN9.526e-1143.59Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661486 ID=EY661486; Name=EY661486; organism=Citrus sinensis; type=EST; length=886bp
CAGATATTAAATCTTCCTACAAATTTTACTTGTTAGAAATTTCTCTACTA
CTGTTACTTTTGTTTTCAACAATCATTTTTTTTGTCTTTCTCTTGTCCAT
AATCATTTGTTCTTGTGGTTATTTTTTTCTGGGGCAGTTCAAATTTTTCA
CAAGTTCTCCTTAGAAGAGCTGTCAATGTTTCTGACCTTTGTTATGTTGG
AACAGACTGAGGATTCCAGGCCTTCTAATGTTTGGATTTTTACTATTAAT
CTTCTCAGGCTTTTATTTGTTTAATAATCTCTTAATCTCTCCATTTTAGA
GCTATTGATGTCTAAAGTAGATAGGTATATTCATGGTGTTCCTATGATGA
TTTCCCTGTTGTGTATCTTGTTACATTTTTGGTGATCCACAGGGCAAGTA
ATGGGTATTCACTCAGCTAGTGAATTTGAAACTAAGTTGAATGCTGCTAC
TAGAGCATTGCGCCTGGTGATTCTGTACTTTACTGCAACATGGTGCGGGC
CCTGCCGTTTCATTTCTCCTCTTTTTACAAACTTAGCCTCAAAATACACG
AAGGTTGTTTTCTTGAAAGTTGACATAGATGAGGCAAGAGATGTAGCTAC
ACGCTGGAATATTGGTTCTGTTCCCACCTTTTTCTTCATAAAGAATGGTA
AGGAAGTTGACAAGGTTGTCGGGGCTGATAAAAGTGCACTTGAAAGGAAG
ATTGCACAACATGCTGGCCAGTAAAACCACTCCTGAATAATGAGAACTTT
AGAGTAATCTCTGCTTGCAAGCCTTTCCTACCCATTTGTTTGCAAGCAAA
TAATGTCTGANTAAATTCAGTATTTGAATAAAATAACTTGCTCCAAAATT
ATCNNTCATTCTTGCTATGNTTACCGAGTAAAGAAT
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