EY661483

Overview
NameEY661483
Unique NameEY661483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12421 contig Csv1_Contig12421:220..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY661483 vs. ExPASy Swiss-Prot
Match: CRTI_SOLLC (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=PDS PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.346e-22
Identity = 71/221 (32.13%), Postives = 107/221 (48.42%), Query Frame = 3
Query:  162 RASLDANVSDMSVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVGADKNLLVKDHTHTFV--NQGGEIGELDFRFPIGAPLHGIRAFLSTNQLKTYDKARNALALALSPVVKALVDPDGALXDIRDLDSISFSDWFLSKGGTQTSIQRNVDPVAYALWFIDCD 818
            R  LD  V+ +        F   P   +   L++ I GAGL G+STA  L D GH+  + E+R  +GGKV ++ D  G+  E GLH+FFG Y N+  L  ++G +  L  K+H+  F   ++ GE    DF   + APL+GI A L  N++ T+ + +   A+ L P +       G    +   D IS  DW   +G            ++ AL FI+ D
Sbjct:   83 RPELDNTVNYLEAAFLSSTFRASPRPTK--PLEIVIAGAGLGGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDDDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFSEALPAPLNGILAILKNNEMLTWPE-KVKFAIGLLPAML------GGQSYVEAQDGISVKDWMRKQGVPDRVTDEVFIAMSKALNFINPD 294          
BLAST of EY661483 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSJ (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 7.346e-22
Identity = 62/168 (36.90%), Postives = 93/168 (55.36%), Query Frame = 3
Query:  255 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVGADKNLLVKDHTHTFV--NQGGEIGELDFRFPIGAPLHGIRAFLSTNQLKTY-DKARNALALALSPVVKALVDPDGALXDIRDLDSISFSDWFLSKG 749
            L+V I GAGLAG+STA  L D GH+  + E+R  +GGK+ ++ D+ G+  E GLH+FFG Y N+  L  ++G +  L  K+H+  F   N+ GE    DF   + APL+GI A L  N++ T+ +K + AL L  + V        G    +   D  + S+W   +G
Sbjct:  105 LQVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILRNNEMLTWPEKVKFALGLLPAMV--------GGQAYVEAQDGFTVSEWMKKQG 264          
BLAST of EY661483 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSI (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 7.346e-22
Identity = 62/168 (36.90%), Postives = 93/168 (55.36%), Query Frame = 3
Query:  255 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVGADKNLLVKDHTHTFV--NQGGEIGELDFRFPIGAPLHGIRAFLSTNQLKTY-DKARNALALALSPVVKALVDPDGALXDIRDLDSISFSDWFLSKG 749
            L+V I GAGLAG+STA  L D GH+  + E+R  +GGK+ ++ D+ G+  E GLH+FFG Y N+  L  ++G +  L  K+H+  F   N+ GE    DF   + APL+GI A L  N++ T+ +K + AL L  + V        G    +   D  + S+W   +G
Sbjct:  105 LQVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPLNGIWAILRNNEMLTWPEKVKFALGLLPAMV--------GGQAYVEAQDGFTVSEWMKKQG 264          
BLAST of EY661483 vs. ExPASy Swiss-Prot
Match: CRTI_ARATH (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.637e-21
Identity = 66/191 (34.55%), Postives = 102/191 (53.40%), Query Frame = 3
Query:  255 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVGADKNLLVKDHTHTFV--NQGGEIGELDFRFPIGAPLHGIRAFLSTNQLKTY-DKARNALALALSPVVKALVDPDGALXDIRDLDSISFSDWFLSKGGTQTSIQRNVDPVAYALWFIDCD 818
            LKV I GAGLAG+STA  L D GH+  + E+R  +GGK+ ++ D+ G+  E GLH+FFG Y N+  L  ++G +  L  K+H+  F   ++ GE    DF   + APL+GI A L  N++ T+ +K + A+ L  + V        G    +   D +S  +W   +G  +         ++ AL FI+ D
Sbjct:   93 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRFDFPDVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAMV--------GGQAYVEAQDGLSVKEWMEKQGVPERVTDEVFIAMSKALNFINPD 275          
BLAST of EY661483 vs. ExPASy Swiss-Prot
Match: CRTI_SYNE7 (Phytoene dehydrogenase OS=Synechococcus elongatus (strain PCC 7942) GN=pds PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.791e-21
Identity = 68/190 (35.79%), Postives = 104/190 (54.74%), Query Frame = 3
Query:  255 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVGADKNLLVKDHTHTFVNQGGEIGELD-FRFP-IGAPLHGIRAFLSTNQLKTYDKARNALALALSPVVKALVDPDGALXDIRDLDSISFSDWFLSKGGTQTSIQRNVDPVAYALWFIDCD 818
            ++VAI GAGLAG+S A  L D GH   +YE R  +GGKV ++ D+ G+  E GLH+FFG Y N+ +L K++  +  L  K H+  F NQ  + G    F FP I AP++G+ A LS N + T+++ +    L L P   A++        + ++D  S+++W   +   +         +A AL FID D
Sbjct:    1 MRVAIAGAGLAGLSCAKYLADAGHTPIVYERRDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELNIEDRLQWKSHSMIF-NQPTKPGTYSRFDFPDIPAPINGVAAILSNNDMLTWEE-KIKFGLGLLP---AMIRGQSY---VEEMDQYSWTEWLRKQNIPERVNDEVFIAMAKALNFIDPD 182          
BLAST of EY661483 vs. ExPASy Swiss-Prot
Match: CRTI_SOYBN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.219e-21
Identity = 64/190 (33.68%), Postives = 99/190 (52.11%), Query Frame = 3
Query:  255 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVGADKNLLVKDHTHTFV--NQGGEIGELDFRFPIGAPLHGIRAFLSTNQLKTYDKARNALALALSPVVKALVDPDGALXDIRDLDSISFSDWFLSKGGTQTSIQRNVDPVAYALWFIDCD 818
            L + I GAGLAG+STA  L D GH+  + E+R  +GGKV ++ DK G+  E GLH+FFG Y  +  L  ++G +  L  K+H+  F   N+ GE    DF   + +PL+GI A L  N++ T+ + +   A+ L P +       G    +   D +S  +W   +G  +         ++ AL FI+ D
Sbjct:   99 LNIVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDKDGDWYETGLHIFFGAYPYVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPSPLNGIWAILRNNEMLTWPE-KVKFAIGLLPAML------GGQPYVEAQDGLSVQEWMKKQGVPERVADEVFIAMSKALNFINPD 281          
BLAST of EY661483 vs. ExPASy Swiss-Prot
Match: CRTI_MAIZE (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.122e-21
Identity = 59/168 (35.12%), Postives = 93/168 (55.36%), Query Frame = 3
Query:  255 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVGADKNLLVKDHTHTFV--NQGGEIGELDFRFPIGAPLHGIRAFLSTNQLKTY-DKARNALALALSPVVKALVDPDGALXDIRDLDSISFSDWFLSKG 749
            L+V + GAGLAG+STA  L D GH+  + E+R  +GGKV ++ D+ G+  E GLH+FFG Y N+  L  ++  +  L  K+H+  F   N+ GE    DF   + AP++GI A L  N++ T+ +K + A+ L  + V        G    +   D ++ S+W   +G
Sbjct:   97 LQVVVAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNIQNLFGELRIEDRLQWKEHSMIFAMPNKPGEFSRFDFPETLPAPINGIWAILRNNEMLTWPEKVKFAIGLLPAMV--------GGQPYVEAQDGLTVSEWMKKQG 256          
BLAST of EY661483 vs. ExPASy Swiss-Prot
Match: CRTI_SYNY3 (Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=pds PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.927e-18
Identity = 66/192 (34.38%), Postives = 106/192 (55.21%), Query Frame = 3
Query:  255 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVGADKNLLVKDHTHTFVNQGGEIGELD-FRFP-IGAPLHGIRAFLSTNQLKTY-DKARNALALALSPVVKALVDPDGALXDIRDLDSISFSDWFLSKGGTQTSIQRNV-DPVAYALWFIDCD 818
            ++V I GAGLAG++ A  L D G    + E R  +GGK+ ++ D+ G+  E GLH+FFG Y N+ +L K++  +  L  K+H+  F NQ  + G    F FP I AP++G+ A L  N + T+ +K R  L L     + A+V        + ++D  ++S+W ++K      I++ V   ++ AL FID D
Sbjct:    1 MRVVIAGAGLAGLACAKYLADAGFTPVVLERRDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNMLQLFKELDIEDRLQWKEHSMIF-NQPEKPGTYSRFDFPDIPAPINGLVAILRNNDMLTWPEKIRFGLGL-----LPAIVQGQSY---VEEMDKYTWSEW-MAKQNIPPRIEKEVFIAMSKALNFIDPD 182          
The following BLAST results are available for this feature:
BLAST of EY661483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CRTI_SOLLC7.346e-2232.13Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSJ7.346e-2236.90Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSI7.346e-2236.90Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ARATH1.637e-2134.55Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SYNE72.791e-2135.79Phytoene dehydrogenase OS=Synechococcus elongatus ... [more]
CRTI_SOYBN6.219e-2133.68Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_MAIZE8.122e-2135.12Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SYNY34.927e-1834.38Phytoene dehydrogenase OS=Synechocystis sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661483 ID=EY661483; Name=EY661483; organism=Citrus sinensis; type=EST; length=912bp
CCACGCGTCCGGAGCTGGGCTGAGCTGAATTGAGTTCCGATTGAATTTCT
TGATTTCAGCTCGGGATTTTCAATATGGGTTCTTCAGTTCTGTTTCCTGC
AACTTCAGTCACTGGTGTTAGTTGGTCTCGGGTTCAAGAGAAGTGTCGAA
GATTCTGTGTACGGGCTTCTTTGGACGCTAATGTTTCTGATATGAGTGTT
AATGCACCCAAGGGTTTGTTTCCACCAGAACCAGAACATTATAGAGGACC
AAAGCTGAAAGTGGCTATTATTGGAGCTGGGCTTGCGGGCATGTCAACGG
CAGTGGAATTGTTGGATCAAGGCCACGAGGTGGATATATATGAGTCAAGG
TCTTTTATTGGTGGTAAAGTGGGTTCATTTGTCGATAAACGTGGAAACCA
TATTGAAATGGGCCTGCACGTTTTCTTTGGATGCTACAATAATCTGTTCC
GATTGATGAAAAAGGTCGGTGCGGACAAAAATTTACTTGTGAAGGATCAT
ACTCATACATTTGTAAATCAGGGTGGTGAAATTGGTGAACTTGATTTCCG
GTTCCCAATTGGAGCTCCGTTACATGGGATTCGCGCATTTTTGTCGACAA
ATCAGCTTAAGACTTATGATAAAGCAAGAAATGCTCTTGCTCTTGCTCTG
AGTCCTGTTGTNAAGGCACTTGTTGATCCTGATGGAGCCTTGAANGACAT
ACGAGATTTGGATAGTATAAGCTTCTCTGATTGGTTTTTGTCCAAGGGTG
GTACACAGACGAGTATTCAAAGAAATGTGGATCCTGTTGCCTATGCCCTT
TGGTTTATTGATTGTGATACATCAGGGCTCGGTGNATGCTTACTATATTT
GCACTGTTTGCGACTAAGACTGAGGCTTCCCTATGCGGATGCTCAAGGGT
CTTCAGATGTTA
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