EY661478

Overview
NameEY661478
Unique NameEY661478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2297 contig Csv1_Contig2297:227..1087. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_RHOS5 (Elongation factor Ts OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=tsf PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.030e-22
Identity = 72/218 (33.03%), Postives = 114/218 (52.29%), Query Frame = 3
Query:   99 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNPLFLTKS 752
            ++K+LRE T A M D K AL + D D+EAA+  LR +G   A+KK+ RTA EGL+ +A +      +E+N ETDFV++N  FQ             ++V               E LK       +GG+ TV+  + E  A++GEN+ LRR   +S  S   V+ Y+H +   GLG+I   ++++  D          +  ++AMHI A +P+ L+++
Sbjct:    7 MVKELRESTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKAGRTAAEGLVGVAVSGGTGVAVEVNSETDFVAKNADFQTMVTGFTQAALSVDDV---------------EALKA----ADMGGK-TVETTLQETIAVIGENMTLRRMAKISGDS---VAAYVHNAAADGLGKIGVLVAVKGADNG--------IAKQIAMHIAATSPMALSEA 193          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_WOLPM (Elongation factor Ts OS=Wolbachia pipientis wMel GN=tsf PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.346e-22
Identity = 76/211 (36.02%), Postives = 113/211 (53.55%), Query Frame = 3
Query:  102 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNP 734
            I++LR++T   + D K AL +CD DI+ A+ +LR  G   A KKS R A++GL+A+   E+   +IELNCETDFV+RNE F              E V    S         ++ LK N  +  IG   TVQ AI    +++GE ++L +   L A   GV++ Y+H     GLG+I   ++L+    S     L+ +G ++AMH+VA  P
Sbjct:    8 IRELRDRTGLGLSDCKKALEECDGDIKKAVDKLRTIGLAKADKKSDRVASDGLVAMCLTENCGVLIELNCETDFVARNEKF-------------IELVLNLASIAHQERCTSVDELK-NAKYESIG---TVQEAIMNGTSVLGEKLELSKLCYLEAKD-GVIAGYVH-GDVCGLGKIGALIALQ---SSGDKAKLQEIGKQIAMHVVAMKP 196          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_RHOSK (Elongation factor Ts OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=tsf PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.346e-22
Identity = 71/218 (32.57%), Postives = 113/218 (51.83%), Query Frame = 3
Query:   99 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNPLFLTKS 752
            ++K+LRE T A M D K AL + D D+EAA+  LR +G   A+KK+ RTA EGL+ +  +      +E+N ETDFV++N  FQ             +++               E LK       +GG+ TV+  + E  A++GEN+ LRR   +S  S   V+ Y+H +   GLG+I   ++++  D          +  ++AMHI A NP+ L+++
Sbjct:    7 MVKELRESTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKAGRTAAEGLVGVCVDGGTGVAVEVNSETDFVAKNADFQSMVTGFTKAALTVDDI---------------EALKA----ADMGGK-TVETTLQETIAVIGENMTLRRMAKISGDS---VAAYVHNAAADGLGKIGVLVAVKGADNG--------IAKQVAMHIAATNPMALSEA 193          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_RHOS4 (Elongation factor Ts OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=tsf PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.346e-22
Identity = 71/218 (32.57%), Postives = 113/218 (51.83%), Query Frame = 3
Query:   99 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNPLFLTKS 752
            ++K+LRE T A M D K AL + D D+EAA+  LR +G   A+KK+ RTA EGL+ +  +      +E+N ETDFV++N  FQ             +++               E LK       +GG+ TV+  + E  A++GEN+ LRR   +S  S   V+ Y+H +   GLG+I   ++++  D          +  ++AMHI A NP+ L+++
Sbjct:    7 MVKELRESTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKAGRTAAEGLVGVCVDGGTGVAVEVNSETDFVAKNADFQSMVTGFTKAALTVDDI---------------EALKA----ADMGGK-TVETTLQETIAVIGENMTLRRMAKISGDS---VAAYVHNAAADGLGKIGVLVAVKGADNG--------IAKQVAMHIAATNPMALSEA 193          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_RHOS1 (Elongation factor Ts OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=tsf PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.346e-22
Identity = 71/218 (32.57%), Postives = 113/218 (51.83%), Query Frame = 3
Query:   99 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNPLFLTKS 752
            ++K+LRE T A M D K AL + D D+EAA+  LR +G   A+KK+ RTA EGL+ +  +      +E+N ETDFV++N  FQ             +++               E LK       +GG+ TV+  + E  A++GEN+ LRR   +S  S   V+ Y+H +   GLG+I   ++++  D          +  ++AMHI A NP+ L+++
Sbjct:    7 MVKELRESTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKAGRTAAEGLVGVCVDGGTGVAVEVNSETDFVAKNADFQSMVTGFTKAALTVDDI---------------EALKA----ADMGGK-TVETTLQETIAVIGENMTLRRMAKISGDS---VAAYVHNAAADGLGKIGVLVAVKGADNG--------IAKQVAMHIAATNPMALSEA 193          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_ANAPZ (Elongation factor Ts OS=Anaplasma phagocytophilum (strain HZ) GN=tsf PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.346e-22
Identity = 76/215 (35.35%), Postives = 106/215 (49.30%), Query Frame = 3
Query:   93 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKL-NLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNP 734
            V +IK+LR+ T A + D K AL  C  D++ A + LR++G   A KKS R   +GL+A+       A+++L  ETDFV+RNE F+                     GL+  G E LEG    + D  ++  E      I   AA++GENV L     +  S PGV+ +Y+H     GLG+ A  + LE   G    D L     +LAMHIVA  P
Sbjct:    5 VEVIKELRQITGAGIGDCKEALESCSGDMDKAREYLREKGLSKAYKKSHRDVADGLVAVFAEGDVGAILKLGSETDFVARNEKFRSLALGLV-------------RGLYGYGVEDLEGFSASSYDGSRVADE------IVAAAAVLGENVVLSGVGFVKLSGPGVIGSYVHGMVSEGLGKAAALVVLE---GGPHSDELASFAKQLAMHIVAAKP 197          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_WOLWR (Elongation factor Ts OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=tsf PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.757e-22
Identity = 76/211 (36.02%), Postives = 113/211 (53.55%), Query Frame = 3
Query:  102 IKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNP 734
            I++LR++T   + D K AL +CD DI+ A+ +LR  G   A KKS R A++GL+A+   E+   +IELNCETDFV+RNE F              E V    S         ++ LK N  +  IG   TVQ AI    +++GE ++L +   L A   GV++ Y+H     GLG+I   ++L+     +    L+ +G ++AMHIVA  P
Sbjct:    8 IRELRDRTGLGLSDCKKALEECDGDIKKAVDKLRTIGLAKADKKSDRVASDGLVAMCLTENCGVLIELNCETDFVARNEKF-------------IELVLNLASIAHQERCTSVDELK-NAKYESIG---TVQEAIMNGTSVLGEKLELSKLCYLEAKD-GVIAGYVH-GDVCGLGKIGALIALQSPGDKAK---LQEIGKQIAMHIVAMKP 196          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_EHRCR (Elongation factor Ts OS=Ehrlichia chaffeensis (strain Arkansas) GN=tsf PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.757e-22
Identity = 73/215 (33.95%), Postives = 117/215 (54.42%), Query Frame = 3
Query:   93 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEY-LEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNP 734
            +N +K+LR  T A + D K AL  C  DIE A   LR++G   A KKS++  ++GL+A+  N ++ A++E+N ETDFV+RNE FQ                      L  +  +Y +E ++  L H  + G T++ + I    A++GEN+ L +   LS ++ GVV  Y+H+   + LG+I   ++LE    ++  D L  +  ++AMHIVA  P
Sbjct:    5 INAVKELRNLTGAGVGDCKEALNSCGGDIEKAKNYLREQGIAKAYKKSTKDVSDGLVAVHVNGNQGAILEVNSETDFVARNEKFQKLVL-----------------NLVSLANQYAVEDIEDFLKHEYVSG-TSIHDEIMTNIAVIGENIHLNKIGYLSVNA-GVVGGYIHSPVVNNLGKIGAIVALE---STADNDKLNVLARQIAMHIVAARP 197          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_LISMH (Elongation factor Ts OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=tsf PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.825e-22
Identity = 74/221 (33.48%), Postives = 116/221 (52.49%), Query Frame = 3
Query:   99 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLE-GLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNPLFLTKSFV 758
            ++K+LRE+T A M D K ALV+ + D+E A+  LR++G   A+KKS R A+EG+  +  NE  A V+E+N ETDFV++N+ FQ             + V      +  V P+ LE  LK  + + +     TVQ+ ITE    +GEN+ LRR  +   +       Y+H + + G+        L + +G++     K V    AMHI A NP ++++  V
Sbjct:    8 MVKELREKTGAGMMDCKKALVETEGDMEKAIDYLREKGIAKAAKKSDRVASEGMTHVISNEKHAVVLEVNAETDFVAKNDNFQ-------------QLVDALAKQILAVRPDSLEDALKTEMPNGQ-----TVQDYITEAITKIGENISLRRFEVKEKADNSAFGEYIHMNGRIGV--------LTLLEGTTDTTVAKDV----AMHIAAINPKYISREDV 198          

HSP 2 Score: 21.557 bits (44), Expect = 1.825e-22
Identity = 12/41 (29.27%), Postives = 23/41 (56.10%), Query Frame = 2
Query:  731 PIILDKELCSADALENELEILNLRQKVQGSP-HCQQKMGKG 850
            P  + +E  S + +E+E E+L  +   +G P +  +KM +G
Sbjct:  190 PKYISREDVSTEEVEHEKEVLTQQALNEGKPANIVEKMVEG 230          
BLAST of EY661478 vs. ExPASy Swiss-Prot
Match: EFTS_LISMF (Elongation factor Ts OS=Listeria monocytogenes serotype 4b (strain F2365) GN=tsf PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.825e-22
Identity = 74/221 (33.48%), Postives = 116/221 (52.49%), Query Frame = 3
Query:   99 LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPGSGLFPVGPEYLE-GLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGTLSLEVEDGSSSFDPLKRVGIKLAMHIVAQNPLFLTKSFV 758
            ++K+LRE+T A M D K ALV+ + D+E A+  LR++G   A+KKS R A+EG+  +  NE  A V+E+N ETDFV++N+ FQ             + V      +  V P+ LE  LK  + + +     TVQ+ ITE    +GEN+ LRR  +   +       Y+H + + G+        L + +G++     K V    AMHI A NP ++++  V
Sbjct:    8 MVKELREKTGAGMMDCKKALVETEGDMEKAIDYLREKGIAKAAKKSDRVASEGMTHVISNEKHAVVLEVNAETDFVAKNDNFQ-------------QLVDALAKQILAVRPDSLEDALKTEMPNGQ-----TVQDYITEAITKIGENISLRRFEVKEKADNSAFGEYIHMNGRIGV--------LTLLEGTTDTTVAKDV----AMHIAAINPKYISREDV 198          

HSP 2 Score: 21.557 bits (44), Expect = 1.825e-22
Identity = 12/41 (29.27%), Postives = 23/41 (56.10%), Query Frame = 2
Query:  731 PIILDKELCSADALENELEILNLRQKVQGSP-HCQQKMGKG 850
            P  + +E  S + +E+E E+L  +   +G P +  +KM +G
Sbjct:  190 PKYISREDVSTEEVEHEKEVLTQQALNEGKPANIVEKMVEG 230          
The following BLAST results are available for this feature:
BLAST of EY661478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_RHOS51.030e-2233.03Elongation factor Ts OS=Rhodobacter sphaeroides (s... [more]
EFTS_WOLPM1.346e-2236.02Elongation factor Ts OS=Wolbachia pipientis wMel G... [more]
EFTS_RHOSK1.346e-2232.57Elongation factor Ts OS=Rhodobacter sphaeroides (s... [more]
EFTS_RHOS41.346e-2232.57Elongation factor Ts OS=Rhodobacter sphaeroides (s... [more]
EFTS_RHOS11.346e-2232.57Elongation factor Ts OS=Rhodobacter sphaeroides (s... [more]
EFTS_ANAPZ1.346e-2235.35Elongation factor Ts OS=Anaplasma phagocytophilum ... [more]
EFTS_WOLWR1.757e-2236.02Elongation factor Ts OS=Wolbachia sp. subsp. Droso... [more]
EFTS_EHRCR1.757e-2233.95Elongation factor Ts OS=Ehrlichia chaffeensis (str... [more]
EFTS_LISMH1.825e-2233.48Elongation factor Ts OS=Listeria monocytogenes ser... [more]
EFTS_LISMF1.825e-2233.48Elongation factor Ts OS=Listeria monocytogenes ser... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-E12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661478 ID=EY661478; Name=EY661478; organism=Citrus sinensis; type=EST; length=861bp
GACTTATTTTCCTTCAATACCTGAACCCAAAATCCTCTTTTGCTTTAATT
TCAAGAAACTTCTTTGATCAAGCTCCTGCGGCTACGGAGCAAGTGAATCT
CATTAAGCAGTTAAGGGAACAAACAAGTGCTCCAATGAAGGATGTCAAGT
TGGCTCTTGTTGATTGCGATTGGGATATTGAGGCTGCACTGAAGGAATTG
AGGAAACGAGGGAAAGTTCTGGCGTCAAAGAAGTCGTCTCGAACTGCCAC
TGAGGGCTTACTTGCTTTAGCGCAGAATGAGAGCAAGGCTGCTGTTATTG
AGCTTAATTGTGAGACCGATTTTGTTTCCAGGAATGAGATATTTCAGTAC
TTGGCCTTAGCTTTGGCAAAGCAAGCTTTGGTGGCTGAGAATGTTTCACA
GCCAGGATCTGGGCTCTTTCCTGTTGGTCCTGAGTATTTGGAGGGCTTGA
AGTTGAATCTTGATCATCCAAAAATAGGTGGAGAAACAACTGTCCAGAAT
GCAATTACTGAAGTAGCTGCAATTATGGGGGAGAATGTAAAACTTAGGAG
GGGTTTTTTACTATCTGCATCTTCACCTGGGGTTGTTTCTACCTACCTCC
ACACAAGCCCTCAATCAGGTTTGGGTCGTATTGCTGGGACTCTATCTCTT
GAAGTAGAGGACGGAAGTTCATCATTCGATCCATTAAAGCGTGTAGGGAT
CAAATTGGCAATGCATATAGTTGCTCAAAACCCATTATTCTTGACAAAGA
GCTTTGTTCTGCTGATGCATTAGAGAATGAACTGGAAATCCTTAATCTCA
GGCAGAAAGTACAGGGAAGTCCCCATTGCCAACAAAAAATGGGGAAAGGC
GTTTGCGAAAT
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