EY661477

Overview
NameEY661477
Unique NameEY661477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:225..1115. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY661477 vs. ExPASy Swiss-Prot
Match: CH60_LACCB (60 kDa chaperonin OS=Lactobacillus casei (strain BL23) GN=groL PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.578e-60
Identity = 126/241 (52.28%), Postives = 166/241 (68.88%), Query Frame = 1
Query:   19 LQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVESQSP 741
            L+DIA +TG    + DLGL +++T +EQLG A KVT+ KD+TTI+  A SKD I  R+  +KK++ +T S +D EKL ER+AKL+GGVAV+KVGAATETEL++RK RIEDA NAT AA+EEG V GGG ALV   D +PA+    E+ D + G +IV +AL  P   IA NA              +   GYNA TD++E+M ++G+IDP KVTR ALQNAASVA ++LTT+A+V +   P
Sbjct:  287 LEDIATLTGGTVISSDLGLDLKDTKLEQLGRAGKVTVTKDNTTIVDGAGSKDAIAERVNIIKKQIDDTTSDFDREKLQERLAKLAGGVAVVKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALV---DVLPAVAALKEEGDVQTGINIVLRALEEPVRQIAENAGKEGSVIVEQLKKEKQGVGYNAATDEWEDMAKSGIIDPTKVTRSALQNAASVAALMLTTEAVVADKPDP 524          
BLAST of EY661477 vs. ExPASy Swiss-Prot
Match: CH60_LACC3 (60 kDa chaperonin OS=Lactobacillus casei (strain ATCC 334) GN=groL PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.578e-60
Identity = 126/241 (52.28%), Postives = 166/241 (68.88%), Query Frame = 1
Query:   19 LQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVESQSP 741
            L+DIA +TG    + DLGL +++T +EQLG A KVT+ KD+TTI+  A SKD I  R+  +KK++ +T S +D EKL ER+AKL+GGVAV+KVGAATETEL++RK RIEDA NAT AA+EEG V GGG ALV   D +PA+    E+ D + G +IV +AL  P   IA NA              +   GYNA TD++E+M ++G+IDP KVTR ALQNAASVA ++LTT+A+V +   P
Sbjct:  287 LEDIATLTGGTVISSDLGLDLKDTKLEQLGRAGKVTVTKDNTTIVDGAGSKDAIAERVNIIKKQIDDTTSDFDREKLQERLAKLAGGVAVVKVGAATETELKERKYRIEDALNATRAAVEEGYVAGGGTALV---DVLPAVAALKEEGDVQTGINIVLRALEEPVRQIAENAGKEGSVIVEQLKKEKQGVGYNAATDEWEDMAKSGIIDPTKVTRSALQNAASVAALMLTTEAVVADKPDP 524          
BLAST of EY661477 vs. ExPASy Swiss-Prot
Match: CH60_LACAC (60 kDa chaperonin OS=Lactobacillus acidophilus GN=groL PE=3 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 6.578e-60
Identity = 128/243 (52.67%), Postives = 169/243 (69.55%), Query Frame = 1
Query:   19 LQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVESQSPK 744
            L+DIA +TG      DLG  +++T ++QLG AR+VT+ KDSTTI+  A SKD I+ R   ++K++ E+ S +D +KL ER+AKL+GGVAVI VGAATETEL++R+ RIEDA N+T AA++EG V GGG ALV   D   AIKD K E +DE+ G +IV +AL AP   IA NA            + E   GYNA TDK+ENM++AG+IDP KVTR ALQNAAS+A ++LTT+A+V +    K
Sbjct:  287 LEDIAALTGGTVITDDLGFELKDTKIDQLGQARRVTVTKDSTTIVDGAGSKDAIKEREDSIRKQIEESTSDFDKKKLQERLAKLTGGVAVIHVGAATETELKERRYRIEDALNSTRAAVDEGYVAGGGTALV---DVEKAIKDLKGETSDEQTGINIVLRALSAPVRQIAENAGKDGAVVLNKLESQENEIGYNAATDKWENMVEAGIIDPTKVTRTALQNAASIAALLLTTEAVVADIPEDK 526          
BLAST of EY661477 vs. ExPASy Swiss-Prot
Match: CH60_EXIS2 (60 kDa chaperonin OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=groL PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.578e-60
Identity = 123/242 (50.83%), Postives = 163/242 (67.36%), Query Frame = 1
Query:   16 LLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVESQSP 741
            +L+DI+IVTGAE    +LGL ++ T + QLG A KV + KD+TTI+      D I AR+  ++ ++ ET S +D EKL ER+AKL+GGVAV+KVGAATETEL++RKLRIEDA NAT AA+EEGIV GGG A +H++  V +I   +   DE  G +IV +AL AP   IA NA                  GYNA TD+Y +M++ G++DPAKVTR ALQNAASV+ M LTT+A++ +   P
Sbjct:  286 MLEDISIVTGAELITEELGLDLKETQITQLGRASKVVVSKDNTTIVEGNGHSDSITARVGAIRSQIEETTSDFDREKLQERLAKLAGGVAVVKVGAATETELKERKLRIEDALNATRAAVEEGIVAGGGTAFIHVTKAVESIL-AVTTGDEATGVNIVLRALEAPLRQIAENAGQEGSVIVERLKHEAQGMGYNAATDEYVDMIETGIVDPAKVTRSALQNAASVSAMFLTTEAVIADKPEP 526          
BLAST of EY661477 vs. ExPASy Swiss-Prot
Match: CH60_CHLFF (60 kDa chaperonin OS=Chlamydophila felis (strain Fe/C-56) GN=groL PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.578e-60
Identity = 117/243 (48.15%), Postives = 171/243 (70.37%), Query Frame = 1
Query:   16 LLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVESQSPK 744
            +L+DIAI+TG +  + +LG+ +ENT++  LG A+KV + K+ TTI+    +K++I+AR   +KK++ ++ S YD EKL ER+AKLSGGVAVI+VGAATE E++++K R++DA++AT AA+EEGI+PGGG ALV     + A    L + DE++GA IV KAL AP   IA NA            A     GY+A+ D Y +M++AG++DP KVTRCAL++AASVAG++LTT+A++ +    K
Sbjct:  288 MLEDIAILTGGQLISEELGMKLENTTLSMLGKAKKVIVSKEDTTIVEGLGNKEDIEARCENIKKQIEDSTSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEKKDRVDDAQHATLAAVEEGILPGGGTALVRCIPTLEAFIPILTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIICQQVLARSSNEGYDALRDAYTDMIEAGILDPTKVTRCALESAASVAGLLLTTEALIADIPEDK 530          
BLAST of EY661477 vs. ExPASy Swiss-Prot
Match: CH60_LACSS (60 kDa chaperonin OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=groL PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 8.592e-60
Identity = 124/237 (52.32%), Postives = 164/237 (69.20%), Query Frame = 1
Query:   19 LQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVE 729
            L+DIA +TGA     DLGL ++ T+++QLGTA KVT+ KD TTI+  A SK  I  R+  +KK++AET S +D EKL ER+AKL+GGVAVIKVGAATETEL+++K RIEDA NAT AA+EEG V GGG AL+ + + V A++   E+ D + G +IV +AL  P   IA NA            +     GYNA    +ENM++AG++DP KVTR ALQNAASVA ++LTT+A+V +
Sbjct:  287 LEDIATLTGATVITSDLGLELKETTIDQLGTAGKVTVTKDDTTIVEGAGSKSAIAERVENIKKQIAETTSDFDREKLQERLAKLAGGVAVIKVGAATETELKEQKYRIEDALNATRAAVEEGYVAGGGTALIDVIESVAALE---EEGDVQTGINIVLRALEEPVRQIATNAGLEGSVIVEKVKSQPVEVGYNAANGNWENMIEAGILDPTKVTRSALQNAASVAALMLTTEAVVAD 520          
BLAST of EY661477 vs. ExPASy Swiss-Prot
Match: CH60_GALSU (60 kDa chaperonin, chloroplastic OS=Galdieria sulphuraria GN=groL PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.122e-59
Identity = 120/241 (49.79%), Postives = 171/241 (70.95%), Query Frame = 1
Query:   16 LLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVESQS 738
            +L+DIAI+TG +    D GL ++   +  LG A KV + K+STTII++A +++ ++AR  Q++K++  TDS Y+ EKL ER+AKL+GG+AVIKVGAATETE++D+KLR+EDA NAT AAIEEGIVPGGGA LVHL++ +      +   DE +GA IV+K++ AP   I  N               +++ GY+A T K+ NM ++G+IDPAKVTR ALQNA+S+AGM+LTT+ +VV+  +
Sbjct:  288 ILEDIAILTGGQLITEDAGLSLDKVDLSMLGQANKVIVNKESTTIISNA-NENNVKARCEQIRKQIEITDSSYEKEKLQERLAKLAGGIAVIKVGAATETEMKDKKLRLEDAINATKAAIEEGIVPGGGATLVHLANDLFNWAKGVLKEDELIGALIVEKSITAPLKRIVQNEGKNGAIVVDEIKNLDFSIGYDASTSKFVNMYESGIIDPAKVTRSALQNASSIAGMILTTECLVVDEMN 527          
BLAST of EY661477 vs. ExPASy Swiss-Prot
Match: CH60_BACLD (60 kDa chaperonin OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=groL PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.122e-59
Identity = 124/238 (52.10%), Postives = 166/238 (69.75%), Query Frame = 1
Query:   16 LLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVE 729
            +L+DI+I+TGAE    DLGL +++T + QLG A KV + K++TTI+  A   ++I AR+ Q++ ++ ET S +D EKL ER+AKL+GGVAVIKVGAATETEL++RKLRIEDA N+T AA+EEGIV GGG ALV++ + V A++    + DE  G +IV +AL  P   IAHNA              E   GYNA T ++ NM+  G++DP KVTR ALQNAASVA M LTT+A+V +
Sbjct:  286 MLEDISILTGAEVITEDLGLDLKSTQINQLGRASKVVVTKENTTIVEGAGDTEQIAARVNQIRAQVEETTSEFDKEKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVSGGGTALVNVYNKVAALE---AEGDELTGINIVLRALEEPIRQIAHNAGLEGSVIVERLKNEEIGVGYNAATGEWVNMIDKGIVDPTKVTRSALQNAASVAAMFLTTEAVVAD 520          
BLAST of EY661477 vs. ExPASy Swiss-Prot
Match: CH603_ANAVT (60 kDa chaperonin 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL3 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.122e-59
Identity = 122/248 (49.19%), Postives = 172/248 (69.35%), Query Frame = 1
Query:   16 LLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPA-IKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVESQSPKLR*P 756
            +L+DIA +TG +  + D GL +EN  +E LG AR+  + KD TTI+A+  +++ ++ARI Q+++++ E +S YD EKL +R+AKL+GGVAVIKVGAATETEL+DRKLR+EDA NAT AA+EEGIVPGGG  + H++  +    K +++D +E  G  IV +AL AP   IA NA               +  GY+A+ +K+ NM +AG++DPAKVTR ALQNAAS+ GMVLTT+ +VVE    + + P
Sbjct:  287 VLEDIAALTGGQVISEDTGLKLENVRLEMLGKARRAIVTKDDTTIVAEG-NEEAVKARIEQIRRQIQEVESSYDKEKLQQRLAKLAGGVAVIKVGAATETELKDRKLRLEDAINATKAAVEEGIVPGGGTTIAHIAPQLEEWAKSQMKD-EELTGTMIVARALYAPLRRIADNAGANGAVIVERVRELPFDEGYDAVANKFVNMFEAGIVDPAKVTRSALQNAASIGGMVLTTEGVVVEKPDKQAKAP 532          
BLAST of EY661477 vs. ExPASy Swiss-Prot
Match: CH60_PELTS (60 kDa chaperonin OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=groL PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.466e-59
Identity = 124/242 (51.24%), Postives = 169/242 (69.83%), Query Frame = 1
Query:   16 LLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIK--DKLE--DADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXASEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVE 729
            +LQDIAI+TG      ++GL ++  +++QLG A KV ++K+ T I+  A S DEI  R+AQ+KK++ ET S +D EKL ER+AKL+GGVAVI+VGAATETE++D+KLRIEDA NAT AA+EEGIVPGGG A      ++ A+K  D L+    DE+ G DIV++AL  P   IA NA             ++   G+NA+T ++ NM+ AG++DPAKVTR ALQNAAS+A M+LTT+ +V E
Sbjct:  287 MLQDIAILTGGTVITEEVGLKLDKATIDQLGRANKVRVKKEETIIVGGAGSTDEITKRVAQIKKQIEETTSEFDKEKLQERLAKLAGGVAVIQVGAATETEMKDKKLRIEDALNATRAAVEEGIVPGGGVA------YISALKGLDGLDAGSLDEKTGIDIVRRALEEPLRQIASNAGLEGSVIVEKVKNADPGIGFNALTGEFVNMIDAGIVDPAKVTRTALQNAASIAAMILTTETLVAE 522          
The following BLAST results are available for this feature:
BLAST of EY661477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LACCB6.578e-6052.2860 kDa chaperonin OS=Lactobacillus casei (strain B... [more]
CH60_LACC36.578e-6052.2860 kDa chaperonin OS=Lactobacillus casei (strain A... [more]
CH60_LACAC6.578e-6052.6760 kDa chaperonin OS=Lactobacillus acidophilus GN=... [more]
CH60_EXIS26.578e-6050.8360 kDa chaperonin OS=Exiguobacterium sibiricum (st... [more]
CH60_CHLFF6.578e-6048.1560 kDa chaperonin OS=Chlamydophila felis (strain F... [more]
CH60_LACSS8.592e-6052.3260 kDa chaperonin OS=Lactobacillus sakei subsp. sa... [more]
CH60_GALSU1.122e-5949.7960 kDa chaperonin, chloroplastic OS=Galdieria sulp... [more]
CH60_BACLD1.122e-5952.1060 kDa chaperonin OS=Bacillus licheniformis (strai... [more]
CH603_ANAVT1.122e-5949.1960 kDa chaperonin 3 OS=Anabaena variabilis (strain... [more]
CH60_PELTS1.466e-5951.2460 kDa chaperonin OS=Pelotomaculum thermopropionic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-E11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661477 ID=EY661477; Name=EY661477; organism=Citrus sinensis; type=EST; length=891bp
CGAAAGAAGTAACCTCTCCTTCAAGATATTGCCATTGTGACTGGAGCTGA
GTTTCAAGCTGGAGACCTGGGCTTGCTTATTGAAAACACTTCAGTTGAGC
AGCTAGGTACAGCTAGAAAGGTGACCATCAGAAAGGACTCCACTACCATT
ATTGCTGATGCTGCATCAAAGGATGAAATACAAGCTAGAATTGCACAGCT
GAAAAAGGAGTTGGCTGAGACGGATTCTGTTTATGACTCAGAGAAACTTG
CTGAGAGAATTGCTAAATTGTCTGGCGGGGTTGCTGTTATTAAAGTTGGA
GCTGCCACAGAAACTGAGCTTGAGGACCGTAAACTCCGTATTGAAGATGC
CAAGAATGCAACCTTTGCAGCCATAGAGGAAGGTATTGTTCCTGGTGGTG
GTGCTGCTCTGGTTCATCTGTCTGATCATGTTCCTGCTATCAAGGACAAG
CTTGAAGATGCAGATGAGCGATTAGGTGCTGACATTGTGCAGAAGGCACT
GGTAGCACCTGCATCACTGATAGCTCACAATGCTGGAGTTGAAGGTGAGG
TTGTTGTGGAGAAGGTGAAAGCTAGTGAATGGACGACTGGTTACAATGCA
ATGACAGACAAGTATGAGAACATGCTTCAGGCTGGAGTTATTGATCCTGC
AAAGGTGACAAGATGTGCATTGCAGAATGCGGCTTCAGTTGCAGGAATGG
TCCTGACCACTCAGGCTATTGTCGTGGAGAGCCAAAGCCCAAAACTCCGG
TAGCCGCTCCCGCACAAAGTCTTATGGTGTAATCTCTAAGACTCTCCAGA
TTTAGTTAGGAGGTTTATAGATGAAAGAGTGGTTTTATTGCGGTGAACTG
AAAAGACAGTTTTTACTAATTGAAATAAAACCGTGTCCTTT
back to top