EY661163

Overview
NameEY661163
Unique NameEY661163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_NANDO (50S ribosomal protein L33, chloroplastic OS=Nandina domestica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.618e-29
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+RVILEC SCVRN +NKES GISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRIRVILECNSCVRNDLNKESPGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_CHLSC (50S ribosomal protein L33, chloroplastic OS=Chloranthus spicatus GN=rpl33 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.171e-29
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR  VILECTSCVRNGVNKES GISRYITQ+NRHNTP+RLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRAIVILECTSCVRNGVNKESPGISRYITQRNRHNTPNRLELRKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_SPIOL (50S ribosomal protein L33, chloroplastic OS=Spinacia oleracea GN=rpl33 PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 1.053e-28
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRV+VILECT CVR  VNK SRG+SRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRVKVILECTGCVRKSVNKGSRGVSRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_OLIPU (50S ribosomal protein L33, chloroplastic OS=Olimarabidopsis pumila GN=rpl33 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.053e-28
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRV +ILECTSCVRN + KES GISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKESSGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_NASOF (50S ribosomal protein L33, chloroplastic OS=Nasturtium officinale GN=rpl33 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.053e-28
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRV +ILECTSCVRN + KES GISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKESSGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_DRANE (50S ribosomal protein L33, chloroplastic OS=Draba nemorosa GN=rpl33 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.053e-28
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRV +ILECTSCVRN + KES GISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_CRUWA (50S ribosomal protein L33, chloroplastic OS=Crucihimalaya wallichii GN=rpl33 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.053e-28
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRV +ILECTSCVRN + KES GISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_CAPBU (50S ribosomal protein L33, chloroplastic OS=Capsella bursa-pastoris GN=rpl33 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.053e-28
Identity = 57/65 (87.69%), Postives = 61/65 (93.85%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRV +ILECTSCVRN + KES GISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_GUIAB (50S ribosomal protein L33, chloroplastic OS=Guizotia abyssinica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.796e-28
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+ V+LECT+CVRNGVNKES GISRYITQKNRHNTP+RLEL KFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRIPVLLECTACVRNGVNKESTGISRYITQKNRHNTPNRLELLKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_TOBAC (50S ribosomal protein L33, chloroplastic OS=Nicotiana tabacum GN=rpl33 PE=3 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 2.345e-28
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRV VILECTSCVRN V+K SRGISRYITQKNRHNTP+RLEL+KFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRVTVILECTSCVRNSVDKVSRGISRYITQKNRHNTPNRLELKKFCPYCYKHTIHGEIK 65
The following BLAST results are available for this feature:
BLAST of EY661163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
RK33_NANDO3.618e-2989.2350S ribosomal protein L33, chloroplastic OS=Nandin... [more]
RK33_CHLSC6.171e-2989.2350S ribosomal protein L33, chloroplastic OS=Chlora... [more]
RK33_SPIOL1.053e-2887.6950S ribosomal protein L33, chloroplastic OS=Spinac... [more]
RK33_OLIPU1.053e-2887.6950S ribosomal protein L33, chloroplastic OS=Olimar... [more]
RK33_NASOF1.053e-2887.6950S ribosomal protein L33, chloroplastic OS=Nastur... [more]
RK33_DRANE1.053e-2887.6950S ribosomal protein L33, chloroplastic OS=Draba ... [more]
RK33_CRUWA1.053e-2887.6950S ribosomal protein L33, chloroplastic OS=Crucih... [more]
RK33_CAPBU1.053e-2887.6950S ribosomal protein L33, chloroplastic OS=Capsel... [more]
RK33_GUIAB1.796e-2886.1550S ribosomal protein L33, chloroplastic OS=Guizot... [more]
RK33_TOBAC2.345e-2887.6950S ribosomal protein L33, chloroplastic OS=Nicoti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-030-B06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661163 ID=EY661163; Name=EY661163; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGGGTGAAGAAGTTAGAGCTAGAATCAAATATTTGTGACTA
ATCTCTCTTTCCCCTCTTTTCGTTTTTTTGTTTTACAATTAGAAAGAAGG
AAAGCGAAAGAAAAAAGGTGGCTTCAACCTCAGCGAAACCCGGGTTCAGG
CTCCGATTAAATTAATTATTAATTATCCAGTTAAAAGCAAATAGACAGGT
AAAAGAAAACGGAAATCGAAATATGGCTAGGGTAAGAGTATCCTCCACTA
CAAGATCCTTAAATGAAATACTGGACTGCGATTTAGCAATATAGTTAGAA
ATTCTTGTATTACTTATTATTTTTTATTTTGATTTCCTATTTATTTACTA
TATTGATTGCAATAAAATCTTTATTTCATAAGTTTTTTTTGAGTGGTTAG
CAACTTCTATTTTTTTGTCCCGTGCTTCTTATTCGTTGCGGGTCGGAAAA
TAGAAAAGTTGGGTGAATCAAAAACCCCAAGGAGGTTCATGGCCAAGGGT
AAAGAGGTCCGAGTAAGGGTTATTTTGGAATGTACTAGTTGTGTTCGAAA
CGGTGTTAATAAGGAATCAAGGGGTATTTCCAGATATATTACTCAAAAGA
ATCGACACAATACACCCAGTCGATTGGAATTGAGAAAATTCTGTCCCTAT
TGTTACAAGCATACACTTCATGGGGAGATAAAAAATAGATAGAGTCAAGC
CGCGTGCTTTTGTGTCACCCTTCCAGGGACATGAAAAACTAATCTAGATA
TATATCTAGAATATTTCATATATTTTTATAAAACCAATAAATAATCTTGA
CAAACCAAATCTATAATNGATTCTATAAATCATTTTTGATTCATCAAAAT
GGGATTTAGGGNATAGGATAAACAATTATGGATAAACAAGCGACTCTTCT
TAATCCAA
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