EY661163

Overview
NameEY661163
Unique NameEY661163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_SOLLC (50S ribosomal protein L33, chloroplastic OS=Solanum lycopersicum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.823e-28
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRV VILECTSCVRN V+K SRGISRYITQKNRHNTP+R EL+KFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRVTVILECTSCVRNSVDKVSRGISRYITQKNRHNTPNRFELKKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_SOLBU (50S ribosomal protein L33, chloroplastic OS=Solanum bulbocastanum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.823e-28
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRV VILECTSCVRN V+K SRGISRYITQKNRHNTP+R EL+KFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRVTVILECTSCVRNSVDKVSRGISRYITQKNRHNTPNRFELKKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_MANES (50S ribosomal protein L33, chloroplastic OS=Manihot esculenta GN=rpl33 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.823e-28
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK++R+RVILECT+C RN VNK+S GISRYITQKNRHNTPSRLELRKFC YCYKHT+HGEIK
Sbjct:    1 MAKGKDIRIRVILECTTCTRNSVNKKSTGISRYITQKNRHNTPSRLELRKFCRYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_DAUCA (50S ribosomal protein L33, chloroplastic OS=Daucus carota GN=rpl33 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.823e-28
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+ VILECT CVRNGVNK S GISRYIT+KNRHNTP+RLELRKFCP+CYKHT+HGEIK
Sbjct:    1 MAKGKDVRITVILECTGCVRNGVNKVSTGISRYITEKNRHNTPNRLELRKFCPFCYKHTMHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_LIRTU (50S ribosomal protein L33, chloroplastic OS=Liriodendron tulipifera GN=rpl33 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.911e-28
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR  VIL+CTSCVRN  NKESRG SRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRGIVILQCTSCVRNDFNKESRGTSRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_LEPVR (50S ribosomal protein L33, chloroplastic OS=Lepidium virginicum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.911e-28
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRV +ILECTSCVRN + KES GISRYITQKNRHNTPSRLELRKFC YCYKHT+HGEIK
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCAYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_CUCSA (50S ribosomal protein L33, chloroplastic OS=Cucumis sativus GN=rpl33 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.911e-28
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+ RV VILECT CVRNGVNK+S GISRYITQKNRHNTPSRLELRKFCP CYKHT+HGEIK
Sbjct:    1 MAKGKDARVTVILECTRCVRNGVNKQSIGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_VITVI (50S ribosomal protein L33, chloroplastic OS=Vitis vinifera GN=rpl33 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.164e-27
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAK K+ R+RV+LECTSCVR GVNKES GISRYIT+KNRHNTP RLEL+KFCPYCYKHT+HGEIK
Sbjct:    1 MAKSKDARIRVLLECTSCVRGGVNKESTGISRYITEKNRHNTPGRLELQKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_POPTR (50S ribosomal protein L33, chloroplastic OS=Populus trichocarpa GN=rpl33 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.164e-27
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MA GK+VR+RVILECTSCVR  VNK+S GISRYITQKNRHN PSRLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MANGKDVRIRVILECTSCVRKSVNKKSIGISRYITQKNRHNRPSRLELRKFCPYCYKHTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_POPAL (50S ribosomal protein L33, chloroplastic OS=Populus alba GN=rpl33 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.164e-27
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MA GK+VR+RVILECTSCVR  VNK+S GISRYITQKNRHN PSRLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MANGKDVRIRVILECTSCVRKSVNKKSIGISRYITQKNRHNRPSRLELRKFCPYCYKHTIHGEIK 65
The following BLAST results are available for this feature:
BLAST of EY661163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
RK33_SOLLC6.823e-2886.1550S ribosomal protein L33, chloroplastic OS=Solanu... [more]
RK33_SOLBU6.823e-2886.1550S ribosomal protein L33, chloroplastic OS=Solanu... [more]
RK33_MANES6.823e-2884.6250S ribosomal protein L33, chloroplastic OS=Maniho... [more]
RK33_DAUCA6.823e-2884.6250S ribosomal protein L33, chloroplastic OS=Daucus... [more]
RK33_LIRTU8.911e-2887.6950S ribosomal protein L33, chloroplastic OS=Liriod... [more]
RK33_LEPVR8.911e-2886.1550S ribosomal protein L33, chloroplastic OS=Lepidi... [more]
RK33_CUCSA8.911e-2887.6950S ribosomal protein L33, chloroplastic OS=Cucumi... [more]
RK33_VITVI1.164e-2783.0850S ribosomal protein L33, chloroplastic OS=Vitis ... [more]
RK33_POPTR1.164e-2786.1550S ribosomal protein L33, chloroplastic OS=Populu... [more]
RK33_POPAL1.164e-2786.1550S ribosomal protein L33, chloroplastic OS=Populu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-030-B06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661163 ID=EY661163; Name=EY661163; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGGGTGAAGAAGTTAGAGCTAGAATCAAATATTTGTGACTA
ATCTCTCTTTCCCCTCTTTTCGTTTTTTTGTTTTACAATTAGAAAGAAGG
AAAGCGAAAGAAAAAAGGTGGCTTCAACCTCAGCGAAACCCGGGTTCAGG
CTCCGATTAAATTAATTATTAATTATCCAGTTAAAAGCAAATAGACAGGT
AAAAGAAAACGGAAATCGAAATATGGCTAGGGTAAGAGTATCCTCCACTA
CAAGATCCTTAAATGAAATACTGGACTGCGATTTAGCAATATAGTTAGAA
ATTCTTGTATTACTTATTATTTTTTATTTTGATTTCCTATTTATTTACTA
TATTGATTGCAATAAAATCTTTATTTCATAAGTTTTTTTTGAGTGGTTAG
CAACTTCTATTTTTTTGTCCCGTGCTTCTTATTCGTTGCGGGTCGGAAAA
TAGAAAAGTTGGGTGAATCAAAAACCCCAAGGAGGTTCATGGCCAAGGGT
AAAGAGGTCCGAGTAAGGGTTATTTTGGAATGTACTAGTTGTGTTCGAAA
CGGTGTTAATAAGGAATCAAGGGGTATTTCCAGATATATTACTCAAAAGA
ATCGACACAATACACCCAGTCGATTGGAATTGAGAAAATTCTGTCCCTAT
TGTTACAAGCATACACTTCATGGGGAGATAAAAAATAGATAGAGTCAAGC
CGCGTGCTTTTGTGTCACCCTTCCAGGGACATGAAAAACTAATCTAGATA
TATATCTAGAATATTTCATATATTTTTATAAAACCAATAAATAATCTTGA
CAAACCAAATCTATAATNGATTCTATAAATCATTTTTGATTCATCAAAAT
GGGATTTAGGGNATAGGATAAACAATTATGGATAAACAAGCGACTCTTCT
TAATCCAA
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