EY661163

Overview
NameEY661163
Unique NameEY661163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_COFAR (50S ribosomal protein L33, chloroplastic OS=Coffea arabica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.164e-27
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRV VILECT CVRN VNK S GISRYITQKNRHNTP+RLEL+KFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRVTVILECTDCVRNSVNKVSTGISRYITQKNRHNTPNRLELKKFCPYCYKHTVHGEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_BARVE (50S ribosomal protein L33, chloroplastic OS=Barbarea verna GN=rpl33 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.164e-27
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRV +ILECTSCVRN + KES GISRYITQKNRHNTPSRLELRKFCPYC KHT+HGEIK
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCSKHTIHGEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_CALFG (50S ribosomal protein L33, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl33 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.520e-27
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRV +ILECT C RNG+NKESRGISRYITQKNRHNTPSRLEL+KFC YCYKHT+H EIK
Sbjct:    1 MAKGKDVRVIIILECTGCARNGLNKESRGISRYITQKNRHNTPSRLELKKFCSYCYKHTIHAEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_AETCO (50S ribosomal protein L33, chloroplastic OS=Aethionema cordifolium GN=rpl33 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.520e-27
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRV + LECTSCVRN + KE  GISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRVTIFLECTSCVRNDIKKEFAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_LOBMA (50S ribosomal protein L33, chloroplastic OS=Lobularia maritima GN=rpl33 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.985e-27
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRV +ILECTSCVRN   KE  GISRYITQKNRHNTPSRLELRKFCPYCYKHT+HGEIK
Sbjct:    1 MAKGKDVRVTIILECTSCVRNDSKKELAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_IPOPU (50S ribosomal protein L33, chloroplastic OS=Ipomoea purpurea GN=rpl33 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.985e-27
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAK K+VRV VILECTSCVRNGVNK S GISRYITQKNRHNTP+ LEL+KFCPYCYKHT+HGEIK
Sbjct:    1 MAKSKDVRVAVILECTSCVRNGVNKVSTGISRYITQKNRHNTPNPLELKKFCPYCYKHTIHGEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_ACOCL (50S ribosomal protein L33, chloroplastic OS=Acorus calamus GN=rpl33 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.386e-27
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+ R+ VILECTSCVRNGVNKES GISRYITQKNRHNT SRLELRK+C YCYKHT+HGEIK
Sbjct:    1 MAKGKDARLTVILECTSCVRNGVNKESPGISRYITQKNRHNTSSRLELRKYCRYCYKHTIHGEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_LACSA (50S ribosomal protein L33, chloroplastic OS=Lactuca sativa GN=rpl33 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.776e-27
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVN--KESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+ V+LECT+CVRNGVN  K S GISRYITQKNRHNTP+RLELRKFCPYCYKHT+HGE+K
Sbjct:    1 MAKGKDVRIPVLLECTACVRNGVNVNKASTGISRYITQKNRHNTPNRLELRKFCPYCYKHTIHGEVK 67          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_CICAR (50S ribosomal protein L33, chloroplastic OS=Cicer arietinum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.744e-26
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK++R+ VILECTSC +  VNKESRGISRYITQKNRHNTPSRLELRKFCP+C KHT+H EIK
Sbjct:    1 MAKGKDIRITVILECTSCDKKSVNKESRGISRYITQKNRHNTPSRLELRKFCPFCCKHTIHAEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_ILLOL (50S ribosomal protein L33, chloroplastic OS=Illicium oligandrum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.890e-26
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MA GK+VRV VILECTSC +NG NK+S G+SRYIT+KNRHNTP RLEL KFCPYCYKHT+HGEIK
Sbjct:    1 MAAGKDVRVTVILECTSCAKNGANKKSPGVSRYITEKNRHNTPGRLELIKFCPYCYKHTIHGEIK 65          
The following BLAST results are available for this feature:
BLAST of EY661163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
RK33_COFAR1.164e-2786.1550S ribosomal protein L33, chloroplastic OS=Coffea... [more]
RK33_BARVE1.164e-2786.1550S ribosomal protein L33, chloroplastic OS=Barbar... [more]
RK33_CALFG1.520e-2784.6250S ribosomal protein L33, chloroplastic OS=Calyca... [more]
RK33_AETCO1.520e-2784.6250S ribosomal protein L33, chloroplastic OS=Aethio... [more]
RK33_LOBMA1.985e-2786.1550S ribosomal protein L33, chloroplastic OS=Lobula... [more]
RK33_IPOPU1.985e-2786.1550S ribosomal protein L33, chloroplastic OS=Ipomoe... [more]
RK33_ACOCL3.386e-2786.1550S ribosomal protein L33, chloroplastic OS=Acorus... [more]
RK33_LACSA5.776e-2782.0950S ribosomal protein L33, chloroplastic OS=Lactuc... [more]
RK33_CICAR3.744e-2681.5450S ribosomal protein L33, chloroplastic OS=Cicer ... [more]
RK33_ILLOL4.890e-2680.0050S ribosomal protein L33, chloroplastic OS=Illici... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-030-B06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661163 ID=EY661163; Name=EY661163; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGGGTGAAGAAGTTAGAGCTAGAATCAAATATTTGTGACTA
ATCTCTCTTTCCCCTCTTTTCGTTTTTTTGTTTTACAATTAGAAAGAAGG
AAAGCGAAAGAAAAAAGGTGGCTTCAACCTCAGCGAAACCCGGGTTCAGG
CTCCGATTAAATTAATTATTAATTATCCAGTTAAAAGCAAATAGACAGGT
AAAAGAAAACGGAAATCGAAATATGGCTAGGGTAAGAGTATCCTCCACTA
CAAGATCCTTAAATGAAATACTGGACTGCGATTTAGCAATATAGTTAGAA
ATTCTTGTATTACTTATTATTTTTTATTTTGATTTCCTATTTATTTACTA
TATTGATTGCAATAAAATCTTTATTTCATAAGTTTTTTTTGAGTGGTTAG
CAACTTCTATTTTTTTGTCCCGTGCTTCTTATTCGTTGCGGGTCGGAAAA
TAGAAAAGTTGGGTGAATCAAAAACCCCAAGGAGGTTCATGGCCAAGGGT
AAAGAGGTCCGAGTAAGGGTTATTTTGGAATGTACTAGTTGTGTTCGAAA
CGGTGTTAATAAGGAATCAAGGGGTATTTCCAGATATATTACTCAAAAGA
ATCGACACAATACACCCAGTCGATTGGAATTGAGAAAATTCTGTCCCTAT
TGTTACAAGCATACACTTCATGGGGAGATAAAAAATAGATAGAGTCAAGC
CGCGTGCTTTTGTGTCACCCTTCCAGGGACATGAAAAACTAATCTAGATA
TATATCTAGAATATTTCATATATTTTTATAAAACCAATAAATAATCTTGA
CAAACCAAATCTATAATNGATTCTATAAATCATTTTTGATTCATCAAAAT
GGGATTTAGGGNATAGGATAAACAATTATGGATAAACAAGCGACTCTTCT
TAATCCAA
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