EY661163

Overview
NameEY661163
Unique NameEY661163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_SORBI (50S ribosomal protein L33, chloroplastic OS=Sorghum bicolor GN=rpl33 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.054e-24
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+RVILEC SCVR G NKES GISRY TQKNRHNTP +LELRKFC YC KHT H EIK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGTNKESTGISRYSTQKNRHNTPGQLELRKFCRYCRKHTTHNEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_SACOF (50S ribosomal protein L33, chloroplastic OS=Saccharum officinarum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.054e-24
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+RVILEC SCVR G NKES GISRY TQKNRHNTP +LELRKFC YC KHT H EIK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGTNKESTGISRYSTQKNRHNTPGQLELRKFCRYCRKHTTHNEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_SACHY (50S ribosomal protein L33, chloroplastic OS=Saccharum hybrid GN=rpl33 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.054e-24
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+RVILEC SCVR G NKES GISRY TQKNRHNTP +LELRKFC YC KHT H EIK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGTNKESTGISRYSTQKNRHNTPGQLELRKFCRYCRKHTTHNEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_PHAAO (50S ribosomal protein L33, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl33 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.054e-24
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK++R+ VILECT CVR GVNKE  GISRYITQKNRHNTP+RLE RKFC YC K+T+HGEIK
Sbjct:    1 MAKGKDIRIIVILECTCCVRKGVNKELLGISRYITQKNRHNTPNRLEFRKFCRYCQKYTIHGEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_MAIZE (50S ribosomal protein L33, chloroplastic OS=Zea mays GN=rpl33 PE=3 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 2.054e-24
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+RVILEC SCVR G NKES GISRY TQKNRHNTP +LELRKFC YC KHT H EIK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGTNKESTGISRYSTQKNRHNTPGQLELRKFCRYCRKHTTHNEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_ORYSJ (50S ribosomal protein L33, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.577e-24
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+RVIL+C SCVR G N+ES GISRY TQKNRHNTP +LELRKFC YC KHT+H EIK
Sbjct:    1 MAKGKDVRIRVILQCVSCVRKGANEESAGISRYSTQKNRHNTPGQLELRKFCRYCRKHTIHAEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_ORYSI (50S ribosomal protein L33, chloroplastic OS=Oryza sativa subsp. indica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.577e-24
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+RVIL+C SCVR G N+ES GISRY TQKNRHNTP +LELRKFC YC KHT+H EIK
Sbjct:    1 MAKGKDVRIRVILQCVSCVRKGANEESAGISRYSTQKNRHNTPGQLELRKFCRYCRKHTIHAEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_ORYSA (50S ribosomal protein L33, chloroplastic OS=Oryza sativa GN=rpl33 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.577e-24
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+RVIL+C SCVR G N+ES GISRY TQKNRHNTP +LELRKFC YC KHT+H EIK
Sbjct:    1 MAKGKDVRIRVILQCVSCVRKGANEESAGISRYSTQKNRHNTPGQLELRKFCRYCRKHTIHAEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_ORYNI (50S ribosomal protein L33, chloroplastic OS=Oryza nivara GN=rpl33 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.577e-24
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+RVIL+C SCVR G N+ES GISRY TQKNRHNTP +LELRKFC YC KHT+H EIK
Sbjct:    1 MAKGKDVRIRVILQCVSCVRKGANEESAGISRYSTQKNRHNTPGQLELRKFCRYCRKHTIHAEIK 65
[Close]
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_CUSEX (50S ribosomal protein L33, plastid OS=Cuscuta exaltata GN=rpl33 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.977e-24
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:  489 MAKGKEVRVRVILECTSCVRNGV--NKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKN 686
            MAK K+VRV VILECTSC +N V  NK + GISRYITQKNRHNTP+RLE +KFCP CYKHTLHGEIKN
Sbjct:    1 MAKNKDVRVTVILECTSCAQNDVHGNKVATGISRYITQKNRHNTPNRLEFQKFCPRCYKHTLHGEIKN 68
The following BLAST results are available for this feature:
BLAST of EY661163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
RK33_SORBI2.054e-2480.0050S ribosomal protein L33, chloroplastic OS=Sorghu... [more]
RK33_SACOF2.054e-2480.0050S ribosomal protein L33, chloroplastic OS=Saccha... [more]
RK33_SACHY2.054e-2480.0050S ribosomal protein L33, chloroplastic OS=Saccha... [more]
RK33_PHAAO2.054e-2478.4650S ribosomal protein L33, chloroplastic OS=Phalae... [more]
RK33_MAIZE2.054e-2480.0050S ribosomal protein L33, chloroplastic OS=Zea ma... [more]
RK33_ORYSJ4.577e-2476.9250S ribosomal protein L33, chloroplastic OS=Oryza ... [more]
RK33_ORYSI4.577e-2476.9250S ribosomal protein L33, chloroplastic OS=Oryza ... [more]
RK33_ORYSA4.577e-2476.9250S ribosomal protein L33, chloroplastic OS=Oryza ... [more]
RK33_ORYNI4.577e-2476.9250S ribosomal protein L33, chloroplastic OS=Oryza ... [more]
RK33_CUSEX5.977e-2477.9450S ribosomal protein L33, plastid OS=Cuscuta exal... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-030-B06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661163 ID=EY661163; Name=EY661163; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGGGTGAAGAAGTTAGAGCTAGAATCAAATATTTGTGACTA
ATCTCTCTTTCCCCTCTTTTCGTTTTTTTGTTTTACAATTAGAAAGAAGG
AAAGCGAAAGAAAAAAGGTGGCTTCAACCTCAGCGAAACCCGGGTTCAGG
CTCCGATTAAATTAATTATTAATTATCCAGTTAAAAGCAAATAGACAGGT
AAAAGAAAACGGAAATCGAAATATGGCTAGGGTAAGAGTATCCTCCACTA
CAAGATCCTTAAATGAAATACTGGACTGCGATTTAGCAATATAGTTAGAA
ATTCTTGTATTACTTATTATTTTTTATTTTGATTTCCTATTTATTTACTA
TATTGATTGCAATAAAATCTTTATTTCATAAGTTTTTTTTGAGTGGTTAG
CAACTTCTATTTTTTTGTCCCGTGCTTCTTATTCGTTGCGGGTCGGAAAA
TAGAAAAGTTGGGTGAATCAAAAACCCCAAGGAGGTTCATGGCCAAGGGT
AAAGAGGTCCGAGTAAGGGTTATTTTGGAATGTACTAGTTGTGTTCGAAA
CGGTGTTAATAAGGAATCAAGGGGTATTTCCAGATATATTACTCAAAAGA
ATCGACACAATACACCCAGTCGATTGGAATTGAGAAAATTCTGTCCCTAT
TGTTACAAGCATACACTTCATGGGGAGATAAAAAATAGATAGAGTCAAGC
CGCGTGCTTTTGTGTCACCCTTCCAGGGACATGAAAAACTAATCTAGATA
TATATCTAGAATATTTCATATATTTTTATAAAACCAATAAATAATCTTGA
CAAACCAAATCTATAATNGATTCTATAAATCATTTTTGATTCATCAAAAT
GGGATTTAGGGNATAGGATAAACAATTATGGATAAACAAGCGACTCTTCT
TAATCCAA
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