EY661163

Overview
NameEY661163
Unique NameEY661163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_CUSRE (50S ribosomal protein L33, plastid OS=Cuscuta reflexa GN=rpl33 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.060e-23
Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVN--KESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAK K VRV VILECTSC +N VN  K + GISRYITQKNRHNTP+RLE +KFCP CYKHTLHGEIK
Sbjct:    1 MAKTKNVRVTVILECTSCAQNNVNVNKVATGISRYITQKNRHNTPNRLEFKKFCPRCYKHTLHGEIK 67          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_WHEAT (50S ribosomal protein L33, chloroplastic OS=Triticum aestivum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.609e-23
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+RVILEC SCVR G N+ES GISRY TQKNRHNTP +LE +KFC YC KHT H EIK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGANEESTGISRYSTQKNRHNTPGQLEFKKFCRYCRKHTTHHEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_SOYBN (50S ribosomal protein L33, chloroplastic OS=Glycine max GN=rpl33 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.609e-23
Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK++RV VILECT C +  VNKES GISRYIT+KNR NTPSRLELRKFCP C KHT+H EIK
Sbjct:    1 MAKGKDIRVIVILECTGCDKKSVNKESTGISRYITKKNRQNTPSRLELRKFCPRCCKHTIHAEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_LOLPR (50S ribosomal protein L33, chloroplastic OS=Lolium perenne GN=rpl33 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.609e-23
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+RVILEC SCVR G N+ES GISRY TQKNRHNTP +LE +KFC YC KHT H EIK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGANEESTGISRYSTQKNRHNTPGQLEFKKFCRYCRKHTTHHEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_LEMMI (50S ribosomal protein L33, chloroplastic OS=Lemna minor GN=rpl33 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.609e-23
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRN--GVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VRVRVILEC SC RN  GV KE  G+SRY+TQKNRHNTPSRLEL+KFC YC KHT+H E+K
Sbjct:    1 MAKGKDVRVRVILECNSCGRNENGVTKEVPGVSRYVTQKNRHNTPSRLELKKFCRYCNKHTIHVEVK 67          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_HORVU (50S ribosomal protein L33, chloroplastic OS=Hordeum vulgare GN=rpl33 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.609e-23
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+RVILEC SCVR G N+ES GISRY TQKNRHNTP +LE +KFC YC KHT H EIK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGANEESTGISRYSTQKNRHNTPGQLEFKKFCRYCRKHTTHHEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_CYCTA (50S ribosomal protein L33, chloroplastic OS=Cycas taitungensis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.609e-23
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKG +VRV++ LECTSC R+ V+K+  G+SRYITQKNR NTP R EL+KFCPYCYKHT+HGEIK
Sbjct:    1 MAKGGDVRVKITLECTSCTRDSVDKKYPGVSRYITQKNRRNTPIRSELKKFCPYCYKHTIHGEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_CRYJA (50S ribosomal protein L33, chloroplastic OS=Cryptomeria japonica GN=rpl33 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.609e-23
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKG  VRV + LECTSC ++ VNK+S GISRY T+KNR NTP RLEL+KFCPYCYKHT+HGEIK
Sbjct:    1 MAKGGNVRVTITLECTSCTQDSVNKKSPGISRYTTRKNRRNTPLRLELKKFCPYCYKHTIHGEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_AGRST (50S ribosomal protein L33, chloroplastic OS=Agrostis stolonifera GN=rpl33 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.609e-23
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+RVILEC SCVR G N+ES GISRY TQKNRHNTP +LE +KFC YC KHT H EIK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGANEESTGISRYSTQKNRHNTPGQLEFKKFCRYCRKHTTHHEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_CUSGR (50S ribosomal protein L33, plastid OS=Cuscuta gronovii GN=rpl33 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.472e-22
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            M K K VR ++ILECT CVRN  N+ S+G+SRYITQKNRHNTP+RLEL+KFCP CYKH +HGEIK
Sbjct:    1 MEKKKGVRGKIILECTGCVRNSHNRVSKGVSRYITQKNRHNTPNRLELKKFCPRCYKHIIHGEIK 65          
The following BLAST results are available for this feature:
BLAST of EY661163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
RK33_CUSRE5.060e-2377.6150S ribosomal protein L33, plastid OS=Cuscuta refl... [more]
RK33_WHEAT6.609e-2375.3850S ribosomal protein L33, chloroplastic OS=Tritic... [more]
RK33_SOYBN6.609e-2376.9250S ribosomal protein L33, chloroplastic OS=Glycin... [more]
RK33_LOLPR6.609e-2375.3850S ribosomal protein L33, chloroplastic OS=Lolium... [more]
RK33_LEMMI6.609e-2376.1250S ribosomal protein L33, chloroplastic OS=Lemna ... [more]
RK33_HORVU6.609e-2375.3850S ribosomal protein L33, chloroplastic OS=Hordeu... [more]
RK33_CYCTA6.609e-2372.3150S ribosomal protein L33, chloroplastic OS=Cycas ... [more]
RK33_CRYJA6.609e-2373.8550S ribosomal protein L33, chloroplastic OS=Crypto... [more]
RK33_AGRST6.609e-2375.3850S ribosomal protein L33, chloroplastic OS=Agrost... [more]
RK33_CUSGR1.472e-2272.3150S ribosomal protein L33, plastid OS=Cuscuta gron... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-030-B06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661163 ID=EY661163; Name=EY661163; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGGGTGAAGAAGTTAGAGCTAGAATCAAATATTTGTGACTA
ATCTCTCTTTCCCCTCTTTTCGTTTTTTTGTTTTACAATTAGAAAGAAGG
AAAGCGAAAGAAAAAAGGTGGCTTCAACCTCAGCGAAACCCGGGTTCAGG
CTCCGATTAAATTAATTATTAATTATCCAGTTAAAAGCAAATAGACAGGT
AAAAGAAAACGGAAATCGAAATATGGCTAGGGTAAGAGTATCCTCCACTA
CAAGATCCTTAAATGAAATACTGGACTGCGATTTAGCAATATAGTTAGAA
ATTCTTGTATTACTTATTATTTTTTATTTTGATTTCCTATTTATTTACTA
TATTGATTGCAATAAAATCTTTATTTCATAAGTTTTTTTTGAGTGGTTAG
CAACTTCTATTTTTTTGTCCCGTGCTTCTTATTCGTTGCGGGTCGGAAAA
TAGAAAAGTTGGGTGAATCAAAAACCCCAAGGAGGTTCATGGCCAAGGGT
AAAGAGGTCCGAGTAAGGGTTATTTTGGAATGTACTAGTTGTGTTCGAAA
CGGTGTTAATAAGGAATCAAGGGGTATTTCCAGATATATTACTCAAAAGA
ATCGACACAATACACCCAGTCGATTGGAATTGAGAAAATTCTGTCCCTAT
TGTTACAAGCATACACTTCATGGGGAGATAAAAAATAGATAGAGTCAAGC
CGCGTGCTTTTGTGTCACCCTTCCAGGGACATGAAAAACTAATCTAGATA
TATATCTAGAATATTTCATATATTTTTATAAAACCAATAAATAATCTTGA
CAAACCAAATCTATAATNGATTCTATAAATCATTTTTGATTCATCAAAAT
GGGATTTAGGGNATAGGATAAACAATTATGGATAAACAAGCGACTCTTCT
TAATCCAA
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