EY661163

Overview
NameEY661163
Unique NameEY661163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_BRADI (50S ribosomal protein L33, chloroplastic OS=Brachypodium distachyon GN=rpl33 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.472e-22
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+VR+RVILEC SCVR G N+ES GISRY T+KNRHNTP +LE +KFC YC KHT H EIK
Sbjct:    1 MAKGKDVRIRVILECISCVRKGANEESTGISRYSTEKNRHNTPGQLEFKKFCRYCRKHTTHHEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_LOTJA (50S ribosomal protein L33, chloroplastic OS=Lotus japonicus GN=rpl33 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.923e-22
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK++R+ VILECT C +  VNKES GISRYITQKNRHNTPSRLEL KFCP C KH +H EIK
Sbjct:    1 MAKGKDIRIIVILECTGCDQKSVNKESSGISRYITQKNRHNTPSRLELIKFCPCCRKHMIHAEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_CUSOB (50S ribosomal protein L33, plastid OS=Cuscuta obtusiflora GN=rpl33 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.511e-22
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            M K K  R  +ILECT CVRN  N+ S+G+SRYITQKNRHNTP+RLEL+KFCP+CYKH +HGEIK
Sbjct:    1 MEKKKGARGNIILECTGCVRNSHNRVSKGVSRYITQKNRHNTPNRLELKKFCPHCYKHIIHGEIK 65          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_JASNU (50S ribosomal protein L33, chloroplastic OS=Jasminum nudiflorum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.284e-22
Identity = 51/66 (77.27%), Postives = 56/66 (84.85%), Query Frame = 3
Query:  489 MAKGKEV-RVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+  RVRVILECT CVRN V   SRG+SRYITQKNRHNT  +LELRKFCPYC+KH +HGEIK
Sbjct:    1 MAKGKDAPRVRVILECTGCVRNAV---SRGVSRYITQKNRHNTSKQLELRKFCPYCHKHMIHGEIK 63          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_ZYGCR (50S ribosomal protein L33, chloroplastic OS=Zygnema circumcarinatum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.070e-20
Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAK KE+R+ V LECT+C  N   K SRGISRYITQKNR NTP+RLEL KFCPYC  HT+H EIK
Sbjct:    1 MAKNKEIRINVTLECTNCANNS-QKSSRGISRYITQKNRRNTPNRLELNKFCPYCVGHTVHKEIK 64          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_PINTH (50S ribosomal protein L33, chloroplastic OS=Pinus thunbergii GN=rpl33 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.070e-20
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKNR 689
            MAK  ++RV + LECTSC ++ V K   GISRY T+KNR NTP RLE  KFCPYCYKHT+HGEIK R
Sbjct:    1 MAKSGDIRVTITLECTSCTQDSVYKRFPGISRYTTRKNRRNTPIRLESNKFCPYCYKHTIHGEIKKR 67          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_PINKO (50S ribosomal protein L33, chloroplastic OS=Pinus koraiensis GN=rpl33 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.070e-20
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIKNR 689
            MAK  ++RV + LECTSC ++ V K   GISRY T+KNR NTP RLE  KFCPYCYKHT+HGEIK R
Sbjct:    1 MAKSGDIRVTITLECTSCTQDSVYKRFPGISRYTTRKNRRNTPIRLESNKFCPYCYKHTIHGEIKKR 67          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_PELHO (50S ribosomal protein L33, chloroplastic OS=Pelargonium hortorum GN=rpl33 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.839e-20
Identity = 48/69 (69.57%), Postives = 54/69 (78.26%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVN----KESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAKGK+ R +V LECT CV+N VN    K+S GI RY+TQKN  NTPS LELRKFCPYC KHT+HGEIK
Sbjct:    1 MAKGKDNRGKVTLECTGCVQNRVNNKKKKKSAGIYRYLTQKNPKNTPSPLELRKFCPYCNKHTIHGEIK 69          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_ANTFO (50S ribosomal protein L33, chloroplastic OS=Anthoceros formosae GN=rpl33 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.290e-18
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAK K++R+ + LECTSC  N   K   G+SRY+++KNR NTP+RLEL+KFCPYCYKH +H EIK
Sbjct:    1 MAKSKDIRIAITLECTSCSEND-EKRFSGVSRYVSEKNRRNTPTRLELKKFCPYCYKHKIHREIK 64          
BLAST of EY661163 vs. ExPASy Swiss-Prot
Match: RK33_ANGEV (50S ribosomal protein L33, chloroplastic OS=Angiopteris evecta GN=rpl33 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.873e-18
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 3
Query:  489 MAKGKEVRVRVILECTSCVRNGVNKESRGISRYITQKNRHNTPSRLELRKFCPYCYKHTLHGEIK 683
            MAK K+VRV + LEC SC RN  +K   G+SRY T+KN+ NTP+RLEL+KFCPYC +HT+H E+K
Sbjct:    1 MAKSKDVRVTITLECISCDRNNSDKRFPGVSRYTTRKNQRNTPTRLELKKFCPYCSEHTIHRELK 65          
The following BLAST results are available for this feature:
BLAST of EY661163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
RK33_BRADI1.472e-2273.8550S ribosomal protein L33, chloroplastic OS=Brachy... [more]
RK33_LOTJA1.923e-2275.3850S ribosomal protein L33, chloroplastic OS=Lotus ... [more]
RK33_CUSOB2.511e-2270.7750S ribosomal protein L33, plastid OS=Cuscuta obtu... [more]
RK33_JASNU4.284e-2277.2750S ribosomal protein L33, chloroplastic OS=Jasmin... [more]
RK33_ZYGCR3.070e-2070.7750S ribosomal protein L33, chloroplastic OS=Zygnem... [more]
RK33_PINTH3.070e-2065.6750S ribosomal protein L33, chloroplastic OS=Pinus ... [more]
RK33_PINKO3.070e-2065.6750S ribosomal protein L33, chloroplastic OS=Pinus ... [more]
RK33_PELHO6.839e-2069.5750S ribosomal protein L33, chloroplastic OS=Pelarg... [more]
RK33_ANTFO1.290e-1861.5450S ribosomal protein L33, chloroplastic OS=Anthoc... [more]
RK33_ANGEV2.873e-1861.5450S ribosomal protein L33, chloroplastic OS=Angiop... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-030-B06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661163 ID=EY661163; Name=EY661163; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGGGTGAAGAAGTTAGAGCTAGAATCAAATATTTGTGACTA
ATCTCTCTTTCCCCTCTTTTCGTTTTTTTGTTTTACAATTAGAAAGAAGG
AAAGCGAAAGAAAAAAGGTGGCTTCAACCTCAGCGAAACCCGGGTTCAGG
CTCCGATTAAATTAATTATTAATTATCCAGTTAAAAGCAAATAGACAGGT
AAAAGAAAACGGAAATCGAAATATGGCTAGGGTAAGAGTATCCTCCACTA
CAAGATCCTTAAATGAAATACTGGACTGCGATTTAGCAATATAGTTAGAA
ATTCTTGTATTACTTATTATTTTTTATTTTGATTTCCTATTTATTTACTA
TATTGATTGCAATAAAATCTTTATTTCATAAGTTTTTTTTGAGTGGTTAG
CAACTTCTATTTTTTTGTCCCGTGCTTCTTATTCGTTGCGGGTCGGAAAA
TAGAAAAGTTGGGTGAATCAAAAACCCCAAGGAGGTTCATGGCCAAGGGT
AAAGAGGTCCGAGTAAGGGTTATTTTGGAATGTACTAGTTGTGTTCGAAA
CGGTGTTAATAAGGAATCAAGGGGTATTTCCAGATATATTACTCAAAAGA
ATCGACACAATACACCCAGTCGATTGGAATTGAGAAAATTCTGTCCCTAT
TGTTACAAGCATACACTTCATGGGGAGATAAAAAATAGATAGAGTCAAGC
CGCGTGCTTTTGTGTCACCCTTCCAGGGACATGAAAAACTAATCTAGATA
TATATCTAGAATATTTCATATATTTTTATAAAACCAATAAATAATCTTGA
CAAACCAAATCTATAATNGATTCTATAAATCATTTTTGATTCATCAAAAT
GGGATTTAGGGNATAGGATAAACAATTATGGATAAACAAGCGACTCTTCT
TAATCCAA
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