EY661122

Overview
NameEY661122
Unique NameEY661122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA1B_BOVIN (Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 4.500e-64
Identity = 114/144 (79.17%), Postives = 124/144 (86.11%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGDDGHHRHEY 437
            R GKYMACCL+YRGDVVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINY PPTVVPGGDLAKVQRAVCM+SN+T  AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEG FSE RED+AALE DYE V   S EG+      EY
Sbjct:  308 RHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 5.877e-64
Identity = 118/137 (86.13%), Postives = 123/137 (89.78%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGDD 416
            R GKYMACCLMYRGDVVPKDV AAVA IKTKRTIQFVDWCPTGFKCGINY  P+VVPGGDLAKVQRA+CMISN+T  AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEG FSE REDLAALE DYE V A++  GDD
Sbjct:  308 RHGKYMACCLMYRGDVVPKDVTAAVAVIKTKRTIQFVDWCPTGFKCGINYQAPSVVPGGDLAKVQRALCMISNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETV-GDD 443          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA_XENLA (Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 7.675e-64
Identity = 113/137 (82.48%), Postives = 124/137 (90.51%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGDD 416
            R GKYMACCL+YRGDVVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINY PPTVVPGGDLAKVQRAVCM+SN+T  AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEG FSE RED+AALE DYE V A SA+ +D
Sbjct:  308 RHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSADAED 444          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.002e-63
Identity = 113/136 (83.09%), Postives = 122/136 (89.71%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGD 413
            R GKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINY PPTVVPGGDLAKVQRAVCM+SN+T  AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEG FSE REDLAALE DYE V   S EG+
Sbjct:  308 RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVEGE 443          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA3_DROME (Tubulin alpha-3 chain OS=Drosophila melanogaster GN=alphaTub84D PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.309e-63
Identity = 115/144 (79.86%), Postives = 125/144 (86.81%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGDDGHHRHEY 437
            R GKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINY PPTVVPGGDLAKVQRAVCM+SN+T  AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEG FSE REDLAALE DYE V   S +G +G    EY
Sbjct:  308 RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSGDG-EGEGAEEY 450          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA1_DROME (Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.309e-63
Identity = 115/144 (79.86%), Postives = 125/144 (86.81%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGDDGHHRHEY 437
            R GKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINY PPTVVPGGDLAKVQRAVCM+SN+T  AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEG FSE REDLAALE DYE V   S +G +G    EY
Sbjct:  308 RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSGDG-EGEGAEEY 450          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA1D_BOVIN (Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.309e-63
Identity = 113/136 (83.09%), Postives = 122/136 (89.71%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGD 413
            R GKYMACCL+YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINY PPTVVPGGDLAKVQRAVCM+SN+T  AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEG FSE RED+AALE DYE V   S EG+
Sbjct:  308 RHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGMDSVEGE 443          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.233e-63
Identity = 112/137 (81.75%), Postives = 122/137 (89.05%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGDD 416
            R GKYMACC++YRGDVVPKDVNAA+A IKTKRTIQFVDWCPTGFK GINY PPTVVPGGDLAKVQRAVCM+SN+T  AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEG FSE REDLAALE DYE V   S +G+D
Sbjct:  183 RHGKYMACCMLYRGDVVPKDVNAAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTDSMDGED 319          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.233e-63
Identity = 112/136 (82.35%), Postives = 122/136 (89.71%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGD 413
            R GKYM+CC++YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINY PPTVVPGGDLAKVQRAVCM+SN+T  AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEG FSE REDLAALE DYE V   S EG+
Sbjct:  308 RHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVEGE 443          
BLAST of EY661122 vs. ExPASy Swiss-Prot
Match: TBA1_PARLI (Tubulin alpha-1 chain OS=Paracentrotus lividus PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.233e-63
Identity = 113/136 (83.09%), Postives = 122/136 (89.71%), Query Frame = 3
Query:    6 RPGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYHPPTVVPGGDLAKVQRAVCMISNSTIGAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGHFSEDREDLAALENDYENVSAQSAEGD 413
            R GKYMACCL+YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINY PPTVVPGGDLAKVQRAVCM+SN+T  AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEG FSE REDLAALE DYE V   SA+ +
Sbjct:  308 RHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSADAE 443          
The following BLAST results are available for this feature:
BLAST of EY661122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
TBA1B_BOVIN4.500e-6479.17Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2[more]
TBAN_PHYPO5.877e-6486.13Tubulin alpha-1B chain OS=Physarum polycephalum GN... [more]
TBA_XENLA7.675e-6482.48Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2... [more]
TBAT_ONCMY1.002e-6383.09Tubulin alpha chain, testis-specific OS=Oncorhynch... [more]
TBA3_DROME1.309e-6379.86Tubulin alpha-3 chain OS=Drosophila melanogaster G... [more]
TBA1_DROME1.309e-6379.86Tubulin alpha-1 chain OS=Drosophila melanogaster G... [more]
TBA1D_BOVIN1.309e-6383.09Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=... [more]
TBA8_CHICK2.233e-6381.75Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
TBA2_PATVU2.233e-6382.35Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G... [more]
TBA1_PARLI2.233e-6383.09Tubulin alpha-1 chain OS=Paracentrotus lividus PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-029-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661122 ID=EY661122; Name=EY661122; organism=Citrus sinensis; type=EST; length=906bp
CCACGCGTCCGGGCAAGTATATGGCCTGCTGTTTGATGTATCGTGGTGAT
GTTGTGCCTAAGGATGTGAATGCAGCTGTGGCCACCATCAAGACCAAGCG
CACAATTCAGTTTGTTGACTGGTGCCCTACTGGATTCAAGTGTGGTATCA
ACTATCATCCACCAACTGTGGTCCCTGGCGGTGACCTTGCCAAGGTGCAG
AGGGCTGTCTGCATGATTTCCAACTCCACCATCGGTGCTGAAGTGTTTTC
TCGCATTGATCACAAGTTTGACCTAATGTATGCCAAGCGTGCTTTTGTGC
ACTGGTATGTTGGTGAGGGAATGGAGGAAGGACATTTCTCTGAGGACCGG
GAGGATCTTGCTGCCCTGGAGAACGATTATGAAAACGTTAGTGCACAATC
TGCTGAGGGGGACGATGGACACCATCGACATGAGTATTAATTGTGTTTGT
GCACTGATAACGGATGAGCCATCTTTCCTTTCTTATGTTGTTCTGGATGA
TGTTGTCCAATAATGTTGGGGGAGCTCTATGTGCCTGTGCACTGACATTG
TAATTGATTTCTTAAGACTTGGTTGATTATGGTATCGGTAACCGTGATCC
ATGGGTCTTGCTTATAAAATTGCTATTGGCATCAACCCAATTATGATGAT
TGCCGGAAAATTGTAAAGAGGCAATGCTCGGAGAACCCGTTAATTTGATC
AGGCAGAGGTACCGTGGGGGCGCTGACATTATCATCAAGGAAAAAAGCGC
TGGCTCATGATTCATGACCTTTATGCAAGAGCTGGTCTAATGGGTGGCAC
CGCCCAATTTTTGATAACACCAAATGGGTAACCCCTCACTCTCCACATTG
ATGATAACCAAGTAGTTCCAACTTCCTGGATTGACCAAAAGGAGAAAACC
CCACCC
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