EY661117

Overview
NameEY661117
Unique NameEY661117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY661117 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 45/116 (38.79%), Postives = 59/116 (50.86%), Query Frame = 1 
Query:  106 KGTVSFSVEGSG-PTTVKGSLSGLPPGDHALIIHTYGNISNDWISTGPPFKPAGAD-----------GFLENITVTSEGIATFEIYK-TIPLSGTNSVIGRGLVVHSSPSPDPGDG 414
            KGTV F  E    P  V G ++GL  G H   +H +G+ +N  +S+GP F P G +           G L NIT T +G    +I    I L G NS+IGR +VVH+ P  D G G
Sbjct:    6 KGTVFFEQESEKCPVKVTGEVTGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPQGKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCKITLFGANSIIGRTVVVHADPD-DLGKG 120
The following BLAST results are available for this feature:
BLAST of EY661117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SODC_DROBS8.306e-1138.79Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-029-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661117 ID=EY661117; Name=EY661117; organism=Citrus sinensis; type=EST; length=693bp
CCACGCGTCCGAGTCCATCTTCATTTTCCTCTCTCTAAGGGCGTTGTGAT
ATCACACAGCACAATGGTGAATGCAGTTGCAGTTATTACTGGAACTAACG
GTCGCAAGGGAACTGTTTCCTTTAGCGTTGAAGGAAGTGGTCCAACAACT
GTGAAAGGAAGCCTCTCTGGTTTGCCGCCTGGTGATCACGCACTCATTAT
TCACACTTACGGAAACATAAGCAATGATTGGATATCAACTGGACCCCCTT
TTAAACCTGCTGGAGCTGACGGTTTTTTAGAAAACATCACTGTTACTAGT
GAGGGTATTGCTACTTTTGAAATTTACAAGACGATTCCTCTTTCTGGAAC
AAATTCCGTTATTGGAAGGGGTCTTGTAGTCCACTCAAGTCCCAGTCCAG
ATCCTGGTGATGGAGTAGCTTGGGGCACCATCGGTCTCAGTTATTGAAGG
GGCTTCTCTCCATACCATAATAAATACATTTGACATGATGTCGAATGTGT
CTTGAATACTTAATAAAATAAATAATATGTTGTACGAATCAAAATCTGGC
TATAATAAAATAAATAAAAGCCAGGGCATGTCTGTAATATGTTGTACCTT
GTAGAATGTGGCCGTAAATAAAATAAATAAAAGTCCAGGCGTGCTGTGCA
CTGTCCTTAAGACTATTTCTACTCCTTAAAAAAAAAAAAAAAA
back to top