EY661052

Overview
NameEY661052
Unique NameEY661052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661052 vs. ExPASy Swiss-Prot
Match: PME45_ARATH (Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 57/207 (27.54%), Postives = 98/207 (47.34%), Query Frame = 1
Query:  226 RAVTDHCEEMMSMSLKRLEKSLLALQNSPTKNKHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDR--ASYPKNSTY----NRRLDEEQGDFPNWVSAKNRKLLQAPRINA---NVIVAQDGTGNYRTVSEAISA--ASGNXXXXXXXXXXXXXKSN*TD----XITLIGDGNTLLILLGD 801
            + + D  +E +  S+KR+  S +   N+  K   D+ +WL A +++Q+TC D      L        +I +  +    LTSN LA++  +D   +S PK  T      R   +E     +W+S K R++L+A  + A   N  VA+DG+GN+ T++ A+ A  A                +S   D     +T++GDG+   I+ G+
Sbjct:  165 KLLVDEAKEELGTSMKRINDSEV---NNFAKIVPDLDSWLSAVMSYQETCVDGFEEGKLKT------EIRKNFNSSQVLTSNSLAMIKSLDGYLSSVPKVKTRLLLEARSSAKETDHITSWLSNKERRMLKAVDVKALKPNATVAKDGSGNFTTINAALKAMPAKYQGRYTIYIKHGIYDESVIIDKKKPNVTMVGDGSQKTIVTGN 362          
BLAST of EY661052 vs. ExPASy Swiss-Prot
Match: PME59_ARATH (Probable pectinesterase/pectinesterase inhibitor 59 OS=Arabidopsis thaliana GN=PME59 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.517e-11
Identity = 49/157 (31.21%), Postives = 82/157 (52.23%), Query Frame = 1
Query:  226 RAVTDHCEEMMSMSLKRLEKSLLALQNSPTKNKH----DIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA 684
            +AV   C ++   ++ +L ++L  +       K     D QTWL  ALT  +TC+   + L ++   + I  I      +S L SN LA+   +  A    N+T N++       FP W+S K+++LL+A  + AN++VA+DG+G++ TV  AI  A
Sbjct:   98 QAVLADCIDLYGDTIMQLNRTLHGVSPKAGAAKSCTDFDAQTWLSTALTNTETCRRGSSDLNVT---DFITPIVSNTK-ISHLISNCLAVNGALLTAGNKGNTTANQK------GFPTWLSRKDKRLLRA--VRANLVVAKDGSGHFNTVQAAIDVA 242          

HSP 2 Score: 21.1718 bits (43), Expect = 2.517e-11
Identity = 7/16 (43.75%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  696 FCVYVKAXVYKEKIEL 743
            F +YVK  +Y+E I +
Sbjct:  252 FVIYVKRGIYQENINV 267          
The following BLAST results are available for this feature:
BLAST of EY661052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PME45_ARATH2.479e-1127.54Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME59_ARATH2.517e-1131.21Probable pectinesterase/pectinesterase inhibitor 5... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-H05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661052 ID=EY661052; Name=EY661052; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGCAATTACCAAAACAAAATTCAGAAAGAGTGCAGCTTCAC
TAGATTCCCAATCCTTTGTGTCCAGACATTGATGGGGTTTGAGAGTACAA
AACATCAACAACACATCCATCTTATGTCTGCTCTCGTTAACAAAAGCATT
GCTGAAACCAAGCTGCCTACTTCATATTTTTCTAATTTCAGCTCCCAGTT
ACTTGCCAAAGATTTCCAAGGTGTACGTGCTGTCACAGATCACTGCGAAG
AGATGATGAGTATGTCACTCAAACGGCTAGAGAAGTCACTATTAGCCCTA
CAAAATTCCCCAACAAAAAACAAGCATGACATCCAAACGTGGCTCGGCGC
TGCGTTGACTTTCCAGCAAACTTGTAAAGACTCTGTGAATAGCCTCGGTC
TCTCAGCGAGAAATGAGGTTATCAAAAAAATATCTCAAAAAATGGATTAT
TTGTCTCAACTGACCAGTAATCCTTTAGCCCTTGTCAACAGGATAGACAG
GGCTAGTTACCCAAAGAACAGCACATATAATCGGCGTCTAGATGAGGAAC
AAGGTGATTTTCCCAACTGGGTATCGGCGAAAAATAGGAAACTGCTGCAG
GCCCCGCGCATAAATGCAAATGTGATTGTGGCTCAAGATGGAACTGGCAA
TTATAGAACTGTTTCGGAAGCTATCAGTGCTGCTTCTGGAAATCGTTTTG
TGTTTATGTGAAGGCANGTGTTTATAAGGAGAAAATCGAACTAAACAGAC
NGTATTACTTTGATAGGAGATGGCAATACACTACTAATATTACTGGGTGA
TGATATGCTCGTAGAGCACTTCCATGCCTGGCACCCGCACTTTCCAATCA
CAGTGATGGATTATCGCACGAGATATCGAT
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