EY661050

Overview
NameEY661050
Unique NameEY661050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3947 contig Csv1_Contig3947:42..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_DELAS (Malate dehydrogenase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.233e-39
Identity = 89/158 (56.33%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            KK V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++  AL GV MELED  FPLL  ++   +P + F+D ++ALL+GA+PRGPGMERA LL  N Q    QGKALNAVASRNVKV+ VGNP NTNA I +K  P    K+F A+ R
Sbjct:    3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQNALKGVIMELEDCAFPLLAGIEAHSDPLQAFKDTDYALLVGARPRGPGMERADLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR 160          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_DIAST (Malate dehydrogenase OS=Diaphorobacter sp. (strain TPSY) GN=mdh PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.746e-39
Identity = 89/158 (56.33%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            KK V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++  AL GV MELED  FPLL  ++   +P   F+D ++ALL+GA+PRGPGMERA LL  N Q    QGKALNAVASRNVKV+ VGNP NTNA I +K  P    K+F A+ R
Sbjct:    3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQNALKGVIMELEDCAFPLLAGIEAHSDPMTAFKDTDYALLVGARPRGPGMERADLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR 160          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_ACISJ (Malate dehydrogenase OS=Acidovorax sp. (strain JS42) GN=mdh PE=3 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.746e-39
Identity = 89/158 (56.33%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            KK V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++  AL GV MELED  FPLL  ++   +P   F+D ++ALL+GA+PRGPGMERA LL  N Q    QGKALNAVASRNVKV+ VGNP NTNA I +K  P    K+F A+ R
Sbjct:    3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQNALKGVIMELEDCAFPLLAGIEAHSDPMTAFKDTDYALLVGARPRGPGMERADLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR 160          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_POLSJ (Malate dehydrogenase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=mdh PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.587e-39
Identity = 89/158 (56.33%), Postives = 113/158 (71.52%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            KK V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E   +AL GV MEL+D  FPLL  ++   +P   F+DA++ALL+G++PRGPGMERA LL +NG     QGKALNAVASRNVKV+ VGNP NTNA I +K  P   RK+F A+ R
Sbjct:    3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEVPVEGPQKALKGVMMELDDCAFPLLAGMEAHSDPMTAFKDADYALLVGSRPRGPGMERAELLAVNGAIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRKNFTAMLR 160          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_ACIAC (Malate dehydrogenase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=mdh PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.587e-39
Identity = 89/158 (56.33%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            KK V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ +AL GV MELED  FPLL  ++   +P   F+D ++ALL+GA+PRGPGMERA LL  N Q    QGKALNAVASRNVKV+ VGNP NTNA I +K  P    K+F A+ R
Sbjct:    3 KKPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVMMELEDCAFPLLAGMEAHSDPMTAFKDTDYALLVGARPRGPGMERADLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR 160          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_PARUW (Malate dehydrogenase OS=Protochlamydia amoebophila (strain UWE25) GN=mdh PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.685e-39
Identity = 84/153 (54.90%), Postives = 108/153 (70.59%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            + IA+SG AG IA  LLF+LA+GE+ GP+Q I L++L    +L AL GV ME+ED  FPLL  +KI  +PY+ FED ++ALLIGAK RGPGMER  LL  N +    QG+ALNAVA  + K+  VGNPCNTN LI L   P+  R++F+A+TR
Sbjct:    5 IKIAISGGAGQIAYSLLFRLASGELFGPNQLIELQVLEVPNALSALEGVKMEIEDCAFPLLSSIKICSDPYQAFEDIDYALLIGAKSRGPGMERRDLLQENSKIFVNQGQALNAVAKSSAKIFVVGNPCNTNCLIALNNAPSLKRENFYAMTR 157          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH1_RHOFD (Malate dehydrogenase 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh1 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.685e-39
Identity = 88/158 (55.70%), Postives = 113/158 (71.52%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            KK V +AV+GAAG I   +LF++A+GE+LG DQP+ L+LL    E++ QAL GV MEL+D  FPLL  ++   +P   F+D ++ALLIG++PRGPGMERA LL +NG     QGKALNAVASRNVKV+ VGNP NTNA I +K  P    K+F A+ R
Sbjct:    3 KKPVRVAVTGAAGQIGYAILFRIASGEMLGKDQPVILQLLEVPVEKAQQALQGVMMELQDCAFPLLAGMEAHSDPMTAFKDVDYALLIGSRPRGPGMERAELLAVNGAIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR 160          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_LEPCP (Malate dehydrogenase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=mdh PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.044e-38
Identity = 88/158 (55.70%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGS--ERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            K  V +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ +AL GV MELED  FPLL  ++   +P   F+D ++ALL+GA+PRGPGMERA LL  N Q    QGKALNAVASRNVKV+ VGNP NTNA I +K  P    K+F A+ R
Sbjct:    3 KSPVRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEVPVEKAQEALKGVIMELEDCAFPLLAGIEAHSDPMTAFKDTDYALLVGARPRGPGMERADLLAANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR 160          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_BORA1 (Malate dehydrogenase OS=Bordetella avium (strain 197N) GN=mdh PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.325e-38
Identity = 87/158 (55.06%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            K  + +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ +AL GV MELED  FPLL+EV    +P   F+DA+ ALL+GA+PRGPGMER  LL +N Q    QG+ALN VASRNVKV+ VGNP NTNA I +K  P    K+F A+ R
Sbjct:    3 KPAMRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLQEVTAHADPKTAFKDADVALLVGARPRGPGMERKDLLTVNAQIFTAQGRALNEVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR 160          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_BORPD (Malate dehydrogenase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=mdh PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.036e-38
Identity = 87/158 (55.06%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            K  + +AV+GAAG I   LLF++A+GE+LG DQP+ L+LL    E++ +AL GV MEL+D  FPLL+EV    +P   F+DA+ ALL+GA+PRGPGMER  LL +N Q    QGKALN VASRNVKV+ VGNP NTNA I +K  P    K+F A+ R
Sbjct:    3 KPAMRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELDDCAFPLLQEVTAHSDPRTAFKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGKALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR 160          
The following BLAST results are available for this feature:
BLAST of EY661050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_DELAS1.233e-3956.33Malate dehydrogenase OS=Delftia acidovorans (strai... [more]
MDH_DIAST2.746e-3956.33Malate dehydrogenase OS=Diaphorobacter sp. (strain... [more]
MDH_ACISJ2.746e-3956.33Malate dehydrogenase OS=Acidovorax sp. (strain JS4... [more]
MDH_POLSJ3.587e-3956.33Malate dehydrogenase OS=Polaromonas sp. (strain JS... [more]
MDH_ACIAC3.587e-3956.33Malate dehydrogenase OS=Acidovorax avenae subsp. c... [more]
MDH_PARUW4.685e-3954.90Malate dehydrogenase OS=Protochlamydia amoebophila... [more]
MDH1_RHOFD4.685e-3955.70Malate dehydrogenase 1 OS=Rhodoferax ferrireducens... [more]
MDH_LEPCP1.044e-3855.70Malate dehydrogenase OS=Leptothrix cholodnii (stra... [more]
MDH_BORA12.325e-3855.06Malate dehydrogenase OS=Bordetella avium (strain 1... [more]
MDH_BORPD3.036e-3855.06Malate dehydrogenase OS=Bordetella petrii (strain ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-H03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661050 ID=EY661050; Name=EY661050; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGGAATCTTTCTCTCAAGACAAGACTTTTTAGTTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTNGAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCNGCTTATTAG
ATATCAATGGCCAGAATATTGCAGAGCAGGGAAAAGCTCTCAATGCTGTC
GCATCCCGTAATGTCAAGGTGATAGGTGTGGGGAACCCCTGTAACACCAA
TGCTTTAATTTGTTTGAAAATGCTCCCAGCATACCGGAAAGACTTTCATG
CTTTGACTAGATAGATGGA
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