EY661050

Overview
NameEY661050
Unique NameEY661050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3947 contig Csv1_Contig3947:42..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_COXB1 (Malate dehydrogenase OS=Coxiella burnetii (strain CbuK_Q154) GN=mdh PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.194e-34
Identity = 80/155 (51.61%), Postives = 100/155 (64.52%), Query Frame = 1
Query:  400 KMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAYRKD-FHALTR 861
            K V +AV+GAAG I   LLF+LA+G+  G D  + L LL  E +L AL GV MELED  FPLLR + +  +P   F D  WALL+GA PR  GMER  LL+ NG   A QGKA+N  A+ +V++  VGNPCNTN LI +   P   KD F+A+TR
Sbjct:    3 KHVKVAVTGAAGQIGYALLFRLASGQAFGLDTTVDLHLLEIEPALPALKGVVMELEDCAFPLLRNMVVTSDPRVAFNDVNWALLVGAAPRKAGMERKDLLEKNGSIFAGQGKAINENAASDVRIFVVGNPCNTNCLIAMNNAPDIPKDRFYAMTR 157          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_DEIDV (Malate dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=mdh PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.559e-34
Identity = 78/144 (54.17%), Postives = 100/144 (69.44%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLP 828
            K+ V +AV+GAAG I   LLF++AAG++LG DQP+ L+LL    +L+AL GV MEL D  +PLL +V    +P   F+DA++ALL+GA PR  GMER  LL  NG     QG+ALN VASR+VKV+ VGNP NTNALI  +  P
Sbjct:    4 KQPVRVAVTGAAGQIGYSLLFRIAAGDMLGKDQPVILQLLEITPALKALQGVVMELRDGAYPLLADVVTSDDPLVAFKDADYALLVGAMPRKAGMERGDLLGANGGIFKPQGQALNQVASRDVKVLVVGNPANTNALIAQQNAP 147          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_RALME (Malate dehydrogenase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=mdh PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.037e-34
Identity = 81/156 (51.92%), Postives = 106/156 (67.95%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLP-AYRKDFHALTR 861
            K  + +AV+GAAG I   LLF++A G++LG DQP+ L+LL   ++  A+ GV MELED  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL+ N Q    QGKAL+ VASR+VKV+ VGNP NTNA I +K  P   R++F A+ R
Sbjct:    3 KAPMRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQAAVKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEANAQIFTVQGKALDEVASRDVKVLVVGNPANTNAYIAMKSAPNLKRENFTAMLR 158          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_POLNS (Malate dehydrogenase OS=Polynucleobacter necessarius (strain STIR1) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.660e-34
Identity = 81/158 (51.27%), Postives = 104/158 (65.82%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLG--SERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            K  + +AV+GAAG I   LLF++A G++LG DQP+ L+LL    E++ +AL GV MELED  FPLL  +    +P   F+D + ALL+GA+PRGPGMER  LL  N Q    QGKALN VA + VKV+ VGNP NTNA I +K  P    K+F A+ R
Sbjct:    3 KAPMRVAVTGAAGQIGYSLLFRIANGDLLGKDQPVILQLLEIPDEKAQKALAGVMMELEDCAFPLLAGMTAHSDPMTAFKDIDVALLVGARPRGPGMERKDLLSANAQIFTAQGKALNVVAKKTVKVLVVGNPANTNAYIAMKSAPDIPAKNFTAMLR 160          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_KOCRD (Malate dehydrogenase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.660e-34
Identity = 80/155 (51.61%), Postives = 106/155 (68.39%), Query Frame = 1
Query:  406 VNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKM---LPAYRKDFHALTR 861
            V +AV+GAAG I   LLF++A G++LG  +P+ L+LL    +L AL G  MEL+D  FPLL +V+IG +P E+F+ A+ ALL+GA+PR  GMER  LL+ NG    EQG+ALN VA  +V+V+  GNP NTNALI  +    +PA R  F ALTR
Sbjct:    6 VTVAVTGAAGQIGYSLLFRIAHGDMLGRQRPVRLRLLEIPSALPALEGTVMELQDCAFPLLADVEIGSDPREVFDGAQLALLVGARPRTKGMERGDLLEANGAIFTEQGRALNDVADHDVRVVVTGNPANTNALIAQRNAPDIPASR--FSALTR 158          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_BURXL (Malate dehydrogenase OS=Burkholderia xenovorans (strain LB400) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.660e-34
Identity = 81/156 (51.92%), Postives = 105/156 (67.31%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A+ GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N +    QGKALN VASR+VKV+ VGNP NTNA I +K  P   +K+F A+ R
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLSGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGKALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLR 158          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_BURPP (Malate dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.660e-34
Identity = 81/156 (51.92%), Postives = 105/156 (67.31%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A+ GV MEL+D  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N +    QGKALN VASR+VKV+ VGNP NTNA I +K  P   +K+F A+ R
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQGAVKGVVMELDDCAFPLLSGVVITDDPEVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGKALNKVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLR 158          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_BURP8 (Malate dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.474e-34
Identity = 80/156 (51.28%), Postives = 104/156 (66.67%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            K    +AV+GAAG I   LLF++A G++LG DQP+ L+LL   ++  A+ GV MELED  FPLL  V +  +P   F+DA+ ALL+GA+PR  GMER  LL  N +    QGKALN VASR+VKV+ VGNP NTNA I +K  P   +K+F A+ R
Sbjct:    3 KPAKRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQAAVKGVVMELEDCAFPLLAGVVVTDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGKALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLR 158          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH_AKKM8 (Malate dehydrogenase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=mdh PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.474e-34
Identity = 77/156 (49.36%), Postives = 103/156 (66.03%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAYRKD-FHALTR 861
            K  + + V+GAAG IA  LLF++A+G +LGPDQPI L+LL    ++ AL GV MEL D+ FPL+ E+    +P E F  A W LL+G+ PR  GMER  LLDING+    QG+A+   A+++V+V+ VGNPCNTNALI +        D F A+TR
Sbjct:    2 KTPITVTVTGAAGQIAYSLLFRIASGSMLGPDQPINLRLLEIPPAMNALEGVVMELRDAAFPLVNEIVPTSDPDEAFAGANWCLLVGSVPRKAGMERKDLLDINGKVFIGQGQAIARSAAKDVRVLVVGNPCNTNALIAMHNASGVPSDRFFAMTR 157          
BLAST of EY661050 vs. ExPASy Swiss-Prot
Match: MDH2_BURVG (Malate dehydrogenase 2 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.537e-34
Identity = 81/156 (51.92%), Postives = 104/156 (66.67%), Query Frame = 1
Query:  397 KKMVNIAVSGAAGMIANHLLFKLAAGEVLGPDQPIALKLLGSERSLQALXGVAMELEDSLFPLLREVKIGINPYELFEDAEWALLIGAKPRGPGMERAXLLDINGQNIAEQGKALNAVASRNVKVIGVGNPCNTNALICLKMLPAY-RKDFHALTR 861
            K    +AV+GAAG IA  LLF++A G++LG DQP+ L+LL   ++  A+ GV MELED  FPLL  V I  +P   F+DA+ ALL+GA+PR  GMER  LL  N +    QG ALN VASR+VKV+ VGNP NTNA I +K  P   +K+F A+ R
Sbjct:    3 KPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVILQLLDLPQAQAAVKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFTVQGAALNEVASRDVKVLVVGNPANTNAYIAMKSAPDLPKKNFTAMLR 158          
The following BLAST results are available for this feature:
BLAST of EY661050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
MDH_COXB11.194e-3451.61Malate dehydrogenase OS=Coxiella burnetii (strain ... [more]
MDH_DEIDV1.559e-3454.17Malate dehydrogenase OS=Deinococcus deserti (strai... [more]
MDH_RALME2.037e-3451.92Malate dehydrogenase OS=Ralstonia metallidurans (s... [more]
MDH_POLNS2.660e-3451.27Malate dehydrogenase OS=Polynucleobacter necessari... [more]
MDH_KOCRD2.660e-3451.61Malate dehydrogenase OS=Kocuria rhizophila (strain... [more]
MDH_BURXL2.660e-3451.92Malate dehydrogenase OS=Burkholderia xenovorans (s... [more]
MDH_BURPP2.660e-3451.92Malate dehydrogenase OS=Burkholderia phytofirmans ... [more]
MDH_BURP83.474e-3451.28Malate dehydrogenase OS=Burkholderia phymatum (str... [more]
MDH_AKKM83.474e-3449.36Malate dehydrogenase OS=Akkermansia muciniphila (s... [more]
MDH2_BURVG4.537e-3451.92Malate dehydrogenase 2 OS=Burkholderia vietnamiens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-H03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661050 ID=EY661050; Name=EY661050; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGGAATCTTTCTCTCAAGACAAGACTTTTTAGTTTTAAATC
TTTTCTGTTCACCTGCTGTTTCTTTTTCTCGAAATACTTTCTTTATATAC
CTCTGCTGGCTGCTGACATGGCGGTGGTGGCACAGCTCTCACCATCTTCA
TACACCGAAACCACCCGTCTCAGCTCTTCACAGCTCTCACTCTCATCGAC
CCACCTTTCATCTCTCCGTCGCCGTGCTTTTCGACCCATCATCCGACCCA
GAAACCCCACCATCTCTTGCTCTGTAAATCAAGTTCAAGCCCCGGTCGCC
GTTGAACAAGATGATCCTAAGAGCAAGACTAACGATTGCTATGGTGTTTT
CTGTCTCACATATGATCTCAAAGCTGAAGAGGAGACAAAATCCTGGAAGA
AAATGGTTAATATTGCTGTGTCGGGTGCTGCTGGGATGATTGCTAATCAT
TTACTTTTCAAACTCGCAGCTGGGGAGGTTTTAGGGCCAGATCAACCGAT
TGCATTGAAACTACTGGGATCTGAAAGGTCCTTACAGGCCCTTNGAGGAG
TGGCGATGGAACTTGAGGATTCCTTGTTTCCTTTGTTGAGGGAGGTGAAA
ATCGGAATAAATCCATATGAGCTGTTTGAAGATGCAGAATGGGCCCTTCT
GATTGGAGCAAAGCCTCGTGGGCCAGGAATGGAAAGAGCCNGCTTATTAG
ATATCAATGGCCAGAATATTGCAGAGCAGGGAAAAGCTCTCAATGCTGTC
GCATCCCGTAATGTCAAGGTGATAGGTGTGGGGAACCCCTGTAACACCAA
TGCTTTAATTTGTTTGAAAATGCTCCCAGCATACCGGAAAGACTTTCATG
CTTTGACTAGATAGATGGA
back to top