EY661005

Overview
NameEY661005
Unique NameEY661005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7616 contig Csv1_Contig7616:1..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY661005 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 6.245e-47
Identity = 100/215 (46.51%), Postives = 136/215 (63.26%), Query Frame = 2 
Query:   89 KSKILVVGGTGYIGKFIVEASVKAGHPTFALVRENTVSDPVKGKLVEDFKNLGVTLLHGDLHDHESLVKAIKQ--VDVVISTVGNMQLADQTKLITAIKEAGNVKRFFPSEFGNDVDRVNAVEPAKSSFSIKAQIRRAVEAEGIPHTFVASNCFAGYFLPTLCQPGVSVPPRDKLTILGDGNAKAVFNKETDIATFTIKAVDDPRTLNKVLYIRP 727
            K++ LVVGGTG+IG+FI +AS+  G+PTF LVR   VS P K  +++ F++ G  +++G ++D E + K +K+  +DVVIS VG  +L DQ  L+ AIK    +KRF PSEFG+DVDR + VEP  + +  K  +RRAVE  GIP T +  N  A +     C P    PP D+  I GDGN KA F    DI  FT+K +DD RTLNK ++ RP
Sbjct:   12 KNRTLVVGGTGFIGQFITKASLGFGYPTFLLVRPGPVS-PSKAVIIKTFQDKGAKVIYGVINDKECMEKILKEYEIDVVISLVGGARLLDQLTLLEAIKSVKTIKRFLPSEFGHDVDRTDPVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAYFIDGNDIGKFTMKTIDDIRTLNKNVHFRP 225
The following BLAST results are available for this feature:
BLAST of EY661005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN6.245e-4746.51Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-D06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661005 ID=EY661005; Name=EY661005; organism=Citrus sinensis; type=EST; length=882bp
CCACGCGTCCGTTTCGGACGTCCACCATTAATCACTCTCACACAGAAAAA
TTGTCTTCGCTGAAAATTTGAAGTAACTAATGGCTGAAAAAAGCAAGATA
TTGGTCGTTGGAGGCACTGGGTATATAGGAAAGTTCATCGTAGAAGCTAG
TGTAAAGGCCGGCCATCCTACTTTTGCTTTGGTAAGAGAGAACACTGTAT
CTGATCCTGTCAAGGGAAAACTTGTTGAGGATTTCAAGAATTTAGGCGTC
ACTTTGCTCCATGGTGATCTGCACGACCACGAGAGCTTGGTGAAAGCCAT
AAAGCAAGTGGATGTGGTGATATCAACGGTTGGCAACATGCAGCTAGCAG
ATCAGACCAAGCTCATCACTGCCATTAAGGAAGCTGGCAATGTTAAGAGG
TTTTTTCCATCGGAATTTGGAAACGATGTGGATCGTGTGAATGCCGTGGA
GCCGGCAAAAAGTTCATTCTCAATCAAGGCTCAAATCCGCCGTGCTGTGG
AGGCTGAAGGCATCCCCCACACTTTCGTGGCCTCCAACTGCTTTGCCGGC
TATTTTCTTCCCACACTTTGCCAGCCTGGAGTGAGTGTTCCTCCCAGAGA
CAAACTCACTATCCTCGGCGATGGAAATGCTAAGGCCGTTTTCAACAAGG
AAACTGACATTGCAACCTTTACCATCAAAGCCGTGGACGATCCAAGAACA
TTGAACAAGGTCCTCTACATCAGACCTCCTAAAACACTTACTCATTCAAC
GAGCTCGTCGCCCTTTGGGAGAGTTGATTGGCAAAACTCTTGACAAAGTC
TATGTTCCAGAGGACCAACTTCTCAAGACATCCAAGAGCTCCACTCCGCT
GAACATGCGCTAGCATCAATCCTCAGTCTTTG
back to top