EY661004

Overview
NameEY661004
Unique NameEY661004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 8.165e-63
Identity = 133/216 (61.57%), Postives = 150/216 (69.44%), Query Frame = 2
Query:  170 GNAKYTM---------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGT-TLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            GNAK+TM             WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+    VVLMG VEG+RI G P +GE T  +Y    F   G ADDP   AE +VKE++      FS     + +    K PLENL
Sbjct:   19 GNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 232          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.066e-62
Identity = 123/196 (62.76%), Postives = 143/196 (72.96%), Query Frame = 2
Query:  203 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEG-TTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            WYGPDR K+LGPFS  TP+YLTGEFPGDYGWDTAGLSADPE F + R LEVIH RWA+LGALG +TPE+L  +  V F EPVWFKAGAQIFSEGGLDYLG+P L+HAQ+I+A L   VVLMGL+EG+R+NG P  GEG   LY    F   G ADDP T AE +VKEI+      FSC    + +    K P++NL
Sbjct:   39 WYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGP-AGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNL 233          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 1.393e-62
Identity = 127/198 (64.14%), Postives = 144/198 (72.73%), Query Frame = 2
Query:  200 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEG-TTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENLW 787
            +WYGPDR KYLGPFS Q PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+    VVLMG VEG+R+ G P +GEG   +Y    F   G ADDP   AE +VKEI+      FS     + +    K P+ENL+
Sbjct:   48 IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP-LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLF 243          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.052e-62
Identity = 131/227 (57.71%), Postives = 150/227 (66.08%), Query Frame = 2
Query:  107 ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            A+  +G+ R T          G  K    +  WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+    V+LMG VEG+RI G P       LY    F   G ADDP   AE +VKEI+      FS     + +    K PLENL
Sbjct:   24 ASEIIGEGRITMRKTA-----GKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 9.027e-62
Identity = 133/238 (55.88%), Postives = 156/238 (65.55%), Query Frame = 2
Query:  107 ATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            ++PF G++   + +  +V   GN K TM               WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+    VVLMG VEG+R+ G P       LY    F   G A+DP   AE +VKEI+      FS     + +    K PLENL
Sbjct:    9 SSPFAGKAVKLSPSSSEVT--GNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENL 243          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 9.027e-62
Identity = 126/207 (60.87%), Postives = 142/207 (68.60%), Query Frame = 2
Query:  167 MGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            +G  K       WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+    VVLMG VEG+RI G P       LY    F   G ADDP   AE +VKE++      FS     + +    K PLENL
Sbjct:   34 VGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 239          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.179e-61
Identity = 133/238 (55.88%), Postives = 156/238 (65.55%), Query Frame = 2
Query:  107 ATPFLGQSRTTANALKDVVPMGNAKYTM-----------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            ++PF G++   + +  +V   GN K TM               WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+    VVLMG VEG+R+ G P       LY    F   G A+DP   AE +VKEI+      FS     + +    K PLENL
Sbjct:    9 SSPFAGKAVKLSPSSSEVT--GNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 243          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.011e-61
Identity = 128/204 (62.75%), Postives = 142/204 (69.61%), Query Frame = 2
Query:  176 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            AK       WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+    VVLMG VEG+RI G P       LY    F   G ADDP   AE +VKEI+      FS     + +    K PLENL
Sbjct:   42 AKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.627e-61
Identity = 133/238 (55.88%), Postives = 156/238 (65.55%), Query Frame = 2
Query:  101 LRATPFLGQSRTTANALKDVVPMGNAKYTMGNEL---------WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            L +  F GQ+   + +  ++   GN + TM   +         WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+    VVLMG VEG+RI G P       LY    F   G A+DP   AE +VKEI+      FS     + +    K PLENL
Sbjct:    8 LSSPSFAGQAVKLSPSASEI--SGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.627e-61
Identity = 128/205 (62.44%), Postives = 145/205 (70.73%), Query Frame = 2
Query:  176 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGT-TLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            AK       WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+    VVLMG +EG+R+ G P +GE T  LY    F   G ADDP   AE +VKEI+      FS     + +    K PL+NL
Sbjct:   42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGP-LGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNL 244          
The following BLAST results are available for this feature:
BLAST of EY661004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB21_CUCSA8.165e-6361.57Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO1.066e-6262.76Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI1.393e-6264.14Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2A_SPIOL4.052e-6257.71Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_NICPL9.027e-6255.88Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_MAIZE9.027e-6260.87Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_TOBAC1.179e-6155.88Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2G_SOLLC2.011e-6162.75Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC2.627e-6155.88Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB27_TOBAC2.627e-6162.44Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661004 ID=EY661004; Name=EY661004; organism=Citrus sinensis; type=EST; length=885bp
CCACGCGTCCGCAGTTCCAACCGACACAACATCCATAATAACAACTCTCA
GGACAATGGCATCAATAATGGCGGCTGCTACTGCTAGCTCTAGCACTTCT
CTTAGGGCAACCCCATTTCTTGGCCAGAGTAGGACAACTGCTAACGCTCT
AAAAGATGTTGTTCCGATGGGGAATGCCAAGTACACAATGGGAAATGAAC
TGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACCCTTTTCAGCACAG
ACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACTATGGATGGGACAC
TGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGGAACAGGGCTCTTG
AGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACTAGGCTGCATCACC
CCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCAAGGAACCGGTTTG
GTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACTACTTGG
GAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCTGTCCTGAGATTC
CCAGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTATCAATGGCCCTCC
TGGTGTCGGAGAGGGAACGACCCTCTACCTGGTGGCAATATTTTGATCCC
CTGGGCCTGCTGATGATCCTGTTACGTTNGCTGAAACTCAGGTGAAGGAA
ATCAGAATGGCAGGCTAGCTATNGTTTTCATGTTTGGTTTCTTTGCCCAG
CTATTGTGACAGGAAAAGTCCCTTGGAGAACCTCTGGACACCTTGAAACC
CTGTTGCCACAATGCTGGGTCCATGCTACCAGTTTGTACCTGGATCAAAA
CCCATATGAATACGGGAATTCTTGTCAGGGGAAGG
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