EY661004

Overview
NameEY661004
Unique NameEY661004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.882e-59
Identity = 121/196 (61.73%), Postives = 141/196 (71.94%), Query Frame = 2
Query:  203 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGT-TLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            WYGPDRV YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAGAQIFSEGGLDYLG+P L+HAQSILA+    V+LMG +EG+R+ G P +GE T  +Y    F   G ADDP   A+ +VKEI+      FS     + +    K P+ENL
Sbjct:   62 WYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGP-LGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 255          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.882e-59
Identity = 122/203 (60.10%), Postives = 141/203 (69.46%), Query Frame = 2
Query:  179 KYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            K    +  W+GPD VKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+    V+LMG VEG+RI G P       LY    F   G A+ P   AE +VKE++      FS     +P+    K PLENL
Sbjct:    4 KVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENL 205          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.458e-59
Identity = 128/241 (53.11%), Postives = 152/241 (63.07%), Query Frame = 2
Query:  101 LRATPFLGQSRTTANALKDVVPMGNAKYTM------------GNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            L +T F G++    ++L      G A+ TM                WYGPDRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+    VVLMG +EG+R+ G P       LY    F   G ADDP   A+ +VKE++      FS     + +    K PLENL
Sbjct:    8 LSSTAFAGKAVNVPSSL-----FGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 242          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.458e-59
Identity = 129/228 (56.58%), Postives = 149/228 (65.35%), Query Frame = 2
Query:  107 ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGT-TLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            +TP LG  R +            +K       WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E  WFKAG+QIFSEGGLDYLGN +L+HAQSILA+    V+LMG VEG+RI G P +GE T  +Y    F     ADDP   AE +VKEI+      FS     + +    K PLENL
Sbjct:    4 STPQLGVGRVSMRKTA-------SKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 222          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.193e-59
Identity = 123/204 (60.29%), Postives = 137/204 (67.16%), Query Frame = 2
Query:  176 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            AK       WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADP  FA+NR LEVIH RW MLGALGC+ PE+  +   V F E VWFKAG+QIF EGGLDYLGNP+LVHAQSILA+    VVLMG VEG+R+ G P       LY    F   G ADDP   AE +VKEI+      FS     + +    K PLENL
Sbjct:   41 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFPELFAR-NGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 243          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 5.477e-59
Identity = 122/195 (62.56%), Postives = 136/195 (69.74%), Query Frame = 2
Query:  203 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            WYG DRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+    VVLMG VEG+RI G P       LY    F   G ADDP   AE +VKEI+      FS     + +    K PLENL
Sbjct:   49 WYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 7.153e-59
Identity = 122/195 (62.56%), Postives = 136/195 (69.74%), Query Frame = 2
Query:  203 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            WYG DRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+    VVLMG VEG+RI G P       LY    F   G ADDP   AE +VKEI+      FS     + +    K PLENL
Sbjct:   45 WYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 238          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.220e-58
Identity = 122/204 (59.80%), Postives = 138/204 (67.65%), Query Frame = 2
Query:  176 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            AK       WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+  +   V F E VW KAG+QIFSEGGLDYLGNP+LVHAQSILA+    V+LMG VEG+R+ G P       LY    F   G A+DP   AE +VKE +      FS     + +    K PLENL
Sbjct:   42 AKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFAR-NGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENL 244          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 2.081e-58
Identity = 117/163 (71.78%), Postives = 127/163 (77.91%), Query Frame = 2
Query:  200 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEG-TTLYLVAIF*SPGPADDPVTXAE 685
            +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K   V F E VWFKAG+QIF EGGLDYLGNPNLVHAQSILA+    VVLMG VEG+R+ G P +GEG   LY       PG A DP+  AE
Sbjct:   47 IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAK-NGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGP-LGEGLDQLY-------PGGAFDPLGLAE 200          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.550e-58
Identity = 123/197 (62.44%), Postives = 137/197 (69.54%), Query Frame = 2
Query:  203 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEI---RMAG*LXFSCLVSLPSYCDRKSPLENL 784
            WYGPDRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+    VVLMG VEG+RI G P       LY    F   G ADDP    E +VKE+   R+A    F   V   +    K PLENL
Sbjct:   49 WYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQ--AIVTGKGPLENL 242          
The following BLAST results are available for this feature:
BLAST of EY661004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB2A_PYRPY1.882e-5961.73Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_PEA1.882e-5960.10Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB29_MAIZE2.458e-5953.11Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB21_SOYBN2.458e-5956.58Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_PETSP4.193e-5960.29Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_ORYSJ5.477e-5962.56Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_ORYSJ7.153e-5962.56Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_PETSP1.220e-5859.80Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_SILPR2.081e-5871.78Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_MAIZE3.550e-5862.44Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661004 ID=EY661004; Name=EY661004; organism=Citrus sinensis; type=EST; length=885bp
CCACGCGTCCGCAGTTCCAACCGACACAACATCCATAATAACAACTCTCA
GGACAATGGCATCAATAATGGCGGCTGCTACTGCTAGCTCTAGCACTTCT
CTTAGGGCAACCCCATTTCTTGGCCAGAGTAGGACAACTGCTAACGCTCT
AAAAGATGTTGTTCCGATGGGGAATGCCAAGTACACAATGGGAAATGAAC
TGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACCCTTTTCAGCACAG
ACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACTATGGATGGGACAC
TGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGGAACAGGGCTCTTG
AGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACTAGGCTGCATCACC
CCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCAAGGAACCGGTTTG
GTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACTACTTGG
GAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCTGTCCTGAGATTC
CCAGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTATCAATGGCCCTCC
TGGTGTCGGAGAGGGAACGACCCTCTACCTGGTGGCAATATTTTGATCCC
CTGGGCCTGCTGATGATCCTGTTACGTTNGCTGAAACTCAGGTGAAGGAA
ATCAGAATGGCAGGCTAGCTATNGTTTTCATGTTTGGTTTCTTTGCCCAG
CTATTGTGACAGGAAAAGTCCCTTGGAGAACCTCTGGACACCTTGAAACC
CTGTTGCCACAATGCTGGGTCCATGCTACCAGTTTGTACCTGGATCAAAA
CCCATATGAATACGGGAATTCTTGTCAGGGGAAGG
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