EY661004

Overview
NameEY661004
Unique NameEY661004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 5.126e-57
Identity = 116/198 (58.59%), Postives = 141/198 (71.21%), Query Frame = 2
Query:  203 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPG--VGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            +YGPDR K+LGPFS   TP YLTGEFPGDYGWDTAGLSADP+ FAR R +E+IH RWA+LGALG +TPE+L ++  V F EPVWFKAGAQIF++GGL+YLGN +L+HAQSI+A L   VVLMGL E +R NG     + +  TLY    F   G ADDP T AE +VKEI+      FSCL   + +    K P++NL
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNL 230          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.948e-56
Identity = 120/197 (60.91%), Postives = 140/197 (71.07%), Query Frame = 2
Query:  203 WYGPDRVKYLGPFSAQ-TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEG-TTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            +YGP+R K+LGP+S   TP+YLTGEFPGDYGWDTAGLSADPE F R R LE+IH RWAMLGALGC TPE+L K     F E VWFKAGAQIFSEGGLDYLGNP+LVHAQ+I+A     V+LMGL+EG+R+NG P  GEG   LY    F   G ADDP T AE +VKEI+      FS     + +    K P++NL
Sbjct:   36 FYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAK-SGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGP-AGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNL 230          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.263e-55
Identity = 119/204 (58.33%), Postives = 137/204 (67.16%), Query Frame = 2
Query:  176 AKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            AK    +  WYG DRV YLGP S + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E  WFKAG+QIFS+GGLDYLGNP+LVHAQS+LA+    VVLMG VEG+RI G P       LY    F   G A+ P   AE +VKEI+      FS     + +    K PLE+L
Sbjct:   41 AKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDL 243          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.865e-53
Identity = 115/185 (62.16%), Postives = 131/185 (70.81%), Query Frame = 2
Query:  236 PFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGT-TLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            PFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH  WAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+LVHAQSILA+    VVLMG VEG+RI G P +GE T  +Y    F   G ADDP   AE +VKE++      FS     + +    K PLENL
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 183          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.307e-52
Identity = 123/228 (53.95%), Postives = 145/228 (63.60%), Query Frame = 2
Query:  107 ATPFLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGT-TLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            +TP LG  R +   ++   P    K       WYGPDRVKYLGPFS + PSYLTGEF G        LSADPE FA+NR LEVIH RWAMLGALGC+ PE+L +   V F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+    V+LMG VEG+RI G P +GE T  +Y    F   G ADDP   AE +VKE++      FS     + +    K PLENL
Sbjct:   23 STPELGVGRVS---MRKTAP----KTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP-LGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 233          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.911e-52
Identity = 123/216 (56.94%), Postives = 139/216 (64.35%), Query Frame = 2
Query:  218 RVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL-----WTP*NPVATMLGPCYQFVPGS 847
            RVKYLGPFS + PSYLTGEFPGDYGWDTAGLSA PE FA+NR LEVIH R AM  ALGCI PE+L   +   F E VWFKAGAQIFSEGGLDYLGNP+LVHAQSILA+    V+LMG VEG+RI   P +GE T       F S G A+D    AE +VKE++      FS     + +   RK  LENL     WT  N     L     FVPG+
Sbjct:   58 RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSV-MGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGP-LGEVTDPLYPGSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNN---NALSNVTNFVPGN 268          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.218e-51
Identity = 111/195 (56.92%), Postives = 127/195 (65.13%), Query Frame = 2
Query:  203 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            WYG DRV YLGP S   PSYLTGEFPGDYGWDT GLSADPE FA+NR LEVIH RWA+   LGC+ PE+L +   V F E VWFKAG+QIFSEGGL + GNP+LVHAQSILA+    VVLMG VEG+ + G         LYL   F   G  DDP   AE +VKEI+      FS     + +    K P+ENL
Sbjct:   48 WYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLAR-NGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 241          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.071e-46
Identity = 106/197 (53.81%), Postives = 128/197 (64.97%), Query Frame = 2
Query:  203 WYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEP-VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEG-TTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            +YGPD          Q P   TGEFPGDYGWDTAGLSADPE F R R LE+IH R  +LGALG +TPE+L     + F +  +WFKAGA IF +GGL+YLGNP+L+HAQ+I+A L   VVLMGLVEG+R+NG P  GEG   LY    F   G ADDP T AE +VKEI+      F+CL   + +    K P+ENL
Sbjct:   57 FYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGP-AGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENL 251          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.961e-25
Identity = 68/122 (55.74%), Postives = 80/122 (65.57%), Query Frame = 2
Query:  428 VDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEG-TTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENLW 787
            V F E VWFKAGAQIFSEGGLDYLGNPNL+HAQSILA+    VVLMGL+EG+R+ G P +GEG   LY    F   G ADDP   AE +VKEI+      FS     + +    K P+ENL+
Sbjct:    8 VKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGP-LGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLY 128          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.825e-25
Identity = 79/198 (39.90%), Postives = 103/198 (52.02%), Query Frame = 2
Query:  203 WYGPDRVKYLGPF---SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEGTTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            WYGPDR  +L       ++ P YL GE  GDYG+D  GL   PE FA+ +A E+IH RWAMLGA G I PE L K+      E VWFK GA +     L+Y G    +    +LAV+   VVL+G  E +RI    G+     L+    F   G A DP   A  +VKEI+      F+ L   + +Y   + P+ENL
Sbjct:   62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITN--GLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENL 254          
The following BLAST results are available for this feature:
BLAST of EY661004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB2_DUNTE5.126e-5758.59Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE1.948e-5660.91Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_WHEAT1.263e-5558.33Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_CUCSA5.865e-5362.16Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB22_SOYBN1.307e-5253.95Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_MALDO2.911e-5256.94Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB48_MAIZE3.218e-5156.92Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_DUNSA4.071e-4653.81Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY3.961e-2555.74Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH8.825e-2539.90Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661004 ID=EY661004; Name=EY661004; organism=Citrus sinensis; type=EST; length=885bp
CCACGCGTCCGCAGTTCCAACCGACACAACATCCATAATAACAACTCTCA
GGACAATGGCATCAATAATGGCGGCTGCTACTGCTAGCTCTAGCACTTCT
CTTAGGGCAACCCCATTTCTTGGCCAGAGTAGGACAACTGCTAACGCTCT
AAAAGATGTTGTTCCGATGGGGAATGCCAAGTACACAATGGGAAATGAAC
TGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACCCTTTTCAGCACAG
ACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACTATGGATGGGACAC
TGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGGAACAGGGCTCTTG
AGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACTAGGCTGCATCACC
CCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCAAGGAACCGGTTTG
GTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACTACTTGG
GAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCTGTCCTGAGATTC
CCAGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTATCAATGGCCCTCC
TGGTGTCGGAGAGGGAACGACCCTCTACCTGGTGGCAATATTTTGATCCC
CTGGGCCTGCTGATGATCCTGTTACGTTNGCTGAAACTCAGGTGAAGGAA
ATCAGAATGGCAGGCTAGCTATNGTTTTCATGTTTGGTTTCTTTGCCCAG
CTATTGTGACAGGAAAAGTCCCTTGGAGAACCTCTGGACACCTTGAAACC
CTGTTGCCACAATGCTGGGTCCATGCTACCAGTTTGTACCTGGATCAAAA
CCCATATGAATACGGGAATTCTTGTCAGGGGAAGG
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