EY661004

Overview
NameEY661004
Unique NameEY661004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.322e-12
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 2
Query:  242 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQI 472
            +A+ P+ LTGE+P D G+D   L+ADP+ +AR R  EV HGR AML  +GCI PE+L K          WF+AG  +
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELLGK--------GAWFEAGDSV 261          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.846e-12
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 2
Query:  116 FLGQSRTTANALKDVVPMGNAKYTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQ 469
            FLG  R   +  K + P+G+    + + +   PDR  +     +  P +L G  PGD+G+D  GL +DPE+   N   E++H RWAMLGA G   PE L K + V    P W+ AG Q
Sbjct:   34 FLGGKRLRVS--KFIAPVGSRSVAV-SAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTK-IGV-LNTPSWYTAGEQ 144          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.461e-11
Identity = 46/101 (45.54%), Postives = 56/101 (55.45%), Query Frame = 2
Query:  488 LDYLGNPNLVHAQSILAVLRFPVVLMGLVEGFRINGPPGVGEG-TTLYLVAIF*SPGPADDPVTXAETQVKEIRMAG*LXFSCL-VSLPSYCDRKSPLENL 784
            LDYLGNP+LVHAQSILA+    V+LMG VEG+R+ G   +GE    LY    F       DP   AE +VKEI+      FS     + +    K PLENL
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 101          
BLAST of EY661004 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.493e-11
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 2
Query:  254 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQ 469
            P +L G  PGD+G+D  GL++DPE+   N+  E++H RWAMLGA G   PE+L K + +    P W+ AG Q
Sbjct:   75 PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTK-IGI-LNTPSWYTAGEQ 144          
The following BLAST results are available for this feature:
BLAST of EY661004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
LH18_EUGGR1.322e-1246.75Light-harvesting complex I LH38 proteins (Fragment... [more]
CB12_PETHY3.846e-1237.29Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_RAPSA1.461e-1145.54Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB12_SOLLC2.493e-1145.83Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-D05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661004 ID=EY661004; Name=EY661004; organism=Citrus sinensis; type=EST; length=885bp
CCACGCGTCCGCAGTTCCAACCGACACAACATCCATAATAACAACTCTCA
GGACAATGGCATCAATAATGGCGGCTGCTACTGCTAGCTCTAGCACTTCT
CTTAGGGCAACCCCATTTCTTGGCCAGAGTAGGACAACTGCTAACGCTCT
AAAAGATGTTGTTCCGATGGGGAATGCCAAGTACACAATGGGAAATGAAC
TGTGGTATGGGCCAGACAGGGTGAAGTACTTGGGACCCTTTTCAGCACAG
ACTCCATCATACTTGACTGGAGAGTTTCCAGGTGACTATGGATGGGACAC
TGCTGGTTTGTCTGCTGATCCCGAGGCCTTTGCCAGGAACAGGGCTCTTG
AGGTGATCCATGGCAGGTGGGCTATGCTTGGAGCACTAGGCTGCATCACC
CCTGAAGTTCTCGAGAAATGGCTTAGAGTAGACTTCAAGGAACCGGTTTG
GTTCAAAGCTGGAGCTCAGATTTTCTCAGAAGGTGGCCTTGACTACTTGG
GAAACCCCAACCTTGTTCATGCTCAAAGCATTCTGGCTGTCCTGAGATTC
CCAGTTGTCCTCATGGGGCTCGTTGAGGGTTTCCGTATCAATGGCCCTCC
TGGTGTCGGAGAGGGAACGACCCTCTACCTGGTGGCAATATTTTGATCCC
CTGGGCCTGCTGATGATCCTGTTACGTTNGCTGAAACTCAGGTGAAGGAA
ATCAGAATGGCAGGCTAGCTATNGTTTTCATGTTTGGTTTCTTTGCCCAG
CTATTGTGACAGGAAAAGTCCCTTGGAGAACCTCTGGACACCTTGAAACC
CTGTTGCCACAATGCTGGGTCCATGCTACCAGTTTGTACCTGGATCAAAA
CCCATATGAATACGGGAATTCTTGTCAGGGGAAGG
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