EY661000

Overview
NameEY661000
Unique NameEY661000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12425 contig Csv1_Contig12425:469..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.891e-19
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct:  114 TMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.891e-19
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 163
            TMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:  123 TMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.891e-19
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISF+A KPPG
Sbjct:  123 TMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.891e-19
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct:  114 TMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.891e-19
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISF+A KPPG
Sbjct:  114 TMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.891e-19
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 163
            TMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:  123 TMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.776e-19
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVL E+ E +K YP++++RIIGFDN RQVQCISF+A KPPG
Sbjct:  125 TMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.776e-19
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVL E+ E +K YP++++RIIGFDN RQVQCISF+A KPPG
Sbjct:  125 TMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.776e-19
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KP G
Sbjct:  127 TMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPAG 181          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.932e-19
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 163
            TMWKLP++GCTD+ QVLKEV E +KEYP++ +RIIGFDN RQVQCISF+A KPP
Sbjct:  123 TMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPP 176          
The following BLAST results are available for this feature:
BLAST of EY661000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBS2_ORYSJ2.891e-1978.18Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS2B_ARATH2.891e-1975.93Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS1_SOYBN2.891e-1974.55Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_ORYSJ2.891e-1978.18Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI2.891e-1978.18Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1B_ARATH2.891e-1975.93Ribulose bisphosphate carboxylase small chain 1B, ... [more]
RBS2_PETHY3.776e-1974.55Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS1_PETHY3.776e-1974.55Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS1_AMAHP3.776e-1974.55Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_RAPSA4.932e-1974.07Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661000 ID=EY661000; Name=EY661000; organism=Citrus sinensis; type=EST; length=439bp
GACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTT
TGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGA
ATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGC
TGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCC
ATGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCG
ATCAATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCT
GCTGCTCAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTTTTTTA
TATATATTTTAATAATTGAATCCTTTGTTTTCAGTTTCATTAATCTGGGT
CTCGGATGTTCAGTTTAATGAGTGAAGAAACAAAACCCA
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