EY661000

Overview
NameEY661000
Unique NameEY661000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.099e-18
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  118 TMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.099e-18
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  125 TMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.099e-18
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  125 TMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.099e-18
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  123 TMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.099e-18
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  125 TMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.099e-18
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  126 TMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-18
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  125 TMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-18
Identity = 38/55 (69.09%), Postives = 49/55 (89.09%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQC+SF+A+KP G
Sbjct:  118 TMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPTG 172          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-18
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  125 TMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-18
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  125 TMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
The following BLAST results are available for this feature:
BLAST of EY661000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBS3_FLAPR1.099e-1870.91Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3B_SOLLC1.099e-1876.36Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC1.099e-1876.36Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS2_FLAPR1.099e-1870.91Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2A_SOLLC1.099e-1876.36Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS1_SOLLC1.099e-1876.36Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_TOBAC1.435e-1874.55Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FLATR1.435e-1869.09Ribulose bisphosphate carboxylase small chain, chl... [more]
RBSC_SOLTU1.435e-1874.55Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSB_SOLTU1.435e-1874.55Ribulose bisphosphate carboxylase small chain 2B, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661000 ID=EY661000; Name=EY661000; organism=Citrus sinensis; type=EST; length=439bp
GACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTT
TGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGA
ATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGC
TGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCC
ATGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCG
ATCAATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCT
GCTGCTCAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTTTTTTA
TATATATTTTAATAATTGAATCCTTTGTTTTCAGTTTCATTAATCTGGGT
CTCGGATGTTCAGTTTAATGAGTGAAGAAACAAAACCCA
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