EY661000

Overview
NameEY661000
Unique NameEY661000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12425 contig Csv1_Contig12425:469..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-18
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  125 TMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-18
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 163
            TMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISF+A KPP
Sbjct:  123 TMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-18
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  126 TMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-18
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  126 TMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-18
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  126 TMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-18
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  125 TMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-18
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  118 TMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPGG 172          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.874e-18
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDA QVLKE+ E+ K +P  + RIIGFDN RQVQCISFLA KPPG
Sbjct:  127 TMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.874e-18
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 2
Query:    5 MWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 163
            MWKLPM+GCTDATQVL E+ E  K YP S +RIIGFDNKRQVQCISF+A KPP
Sbjct:  128 MWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.874e-18
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 160
            TMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:  124 TMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
The following BLAST results are available for this feature:
BLAST of EY661000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBSA_SOLTU1.435e-1874.55Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS4_SOYBN1.435e-1874.07Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_SOLTU1.435e-1874.55Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_NICSY1.435e-1874.55Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS1_SOLTU1.435e-1874.55Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_NICSY1.435e-1874.55Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_FLAPR1.435e-1870.91Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_MANES1.874e-1874.55Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR1.874e-1877.36Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_LEMGI1.874e-1877.36Ribulose bisphosphate carboxylase small chain SSU5... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661000 ID=EY661000; Name=EY661000; organism=Citrus sinensis; type=EST; length=439bp
GACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTT
TGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGA
ATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGC
TGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCC
ATGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCG
ATCAATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCT
GCTGCTCAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTTTTTTA
TATATATTTTAATAATTGAATCCTTTGTTTTCAGTTTCATTAATCTGGGT
CTCGGATGTTCAGTTTAATGAGTGAAGAAACAAAACCCA
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