EY661000

Overview
NameEY661000
Unique NameEY661000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12425 contig Csv1_Contig12425:469..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.175e-18
Identity = 38/53 (71.70%), Postives = 48/53 (90.57%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 160
            TMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP
Sbjct:  118 TMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.453e-18
Identity = 37/55 (67.27%), Postives = 48/55 (87.27%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI F+A++P G
Sbjct:  123 TMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.453e-18
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTD  QVL E+ E +KEYP++F+RIIGFD+ RQVQC+SF+A KP G
Sbjct:  125 TMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAG 179          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.121e-18
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 160
            TMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF+  KP
Sbjct:  126 TMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.121e-18
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 160
            TMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF+  KP
Sbjct:  126 TMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.215e-17
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTD++QVLKEV E  K YP  F RIIGFDN RQVQCISFL  KP G
Sbjct:  123 TMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKPEG 177          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.586e-17
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 160
            TMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF+  +P
Sbjct:  126 TMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.586e-17
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTD TQVL EV E +  YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  126 TMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.616e-17
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 160
            TMWKLPM+GCTDATQV  EV E +K YP + +RIIGFDN RQVQCISF+A KP
Sbjct:  125 TMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.616e-17
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDA QVL+E+ E+ K YP  + RIIGFDN RQVQCISFLA KP G
Sbjct:  127 TMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181          
The following BLAST results are available for this feature:
BLAST of EY661000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBS6_FLAPR4.175e-1871.70Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS_HELAN5.453e-1867.27Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_SPIOL5.453e-1869.09Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS3_FRIAG7.121e-1869.81Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FRIAG7.121e-1869.81Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_ZANAE1.215e-1774.55Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_FRIAG1.586e-1767.92Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS0_SOLTU1.586e-1770.91Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS_STELP4.616e-1773.58Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR4.616e-1772.73Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661000 ID=EY661000; Name=EY661000; organism=Citrus sinensis; type=EST; length=439bp
GACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTT
TGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGA
ATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGC
TGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCC
ATGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCG
ATCAATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCT
GCTGCTCAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTTTTTTA
TATATATTTTAATAATTGAATCCTTTGTTTTCAGTTTCATTAATCTGGGT
CTCGGATGTTCAGTTTAATGAGTGAAGAAACAAAACCCA
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