EY661000

Overview
NameEY661000
Unique NameEY661000
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.343e-16
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    5 MWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 160
            MWKLPM+GCT+A+QVL EV E  K YP++F+R+IGFDN RQVQCISF+  KP
Sbjct:  135 MWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.754e-16
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 160
            TMWKLPM+GCTD +QV+ E+ E +K YP +F RIIGFDN RQVQCISF+A KP
Sbjct:  123 TMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.992e-16
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 160
            TMWKLPM+G TDA+QVLKE+ EV   YP +FVRIIGFDN RQVQCISF+A  P
Sbjct:  125 TMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.992e-16
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 160
            TMWKLPM+G TDA+QVLKE+ EV   YP +FVRIIGFDN RQVQCISF+A  P
Sbjct:  125 TMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.665e-16
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 2
Query:    5 MWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 160
            MWKLPM+GCT+A+QV+ EV E  K YP +F+R+IGFDN RQVQCISF+  KP
Sbjct:  119 MWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.137e-15
Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 160
            TMW+LP++G TD++QVLKE+ + + EYP SF+RIIGFDN RQVQCISF+A  P
Sbjct:  125 TMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.369e-15
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 160
            TMWKLPM+G TD  QV+KEV EV   YP +FVR+IGF+N RQVQCISF+A  P
Sbjct:   81 TMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.642e-14
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+G TD  QV+ EV EV+K  P +FVR IGF++KR+VQCISF+A KP G
Sbjct:   68 TMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  208 TMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 262          

HSP 2 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  352 TMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 406          

HSP 3 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  495 TMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 549          

HSP 4 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  639 TMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 693          

HSP 5 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  782 TMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 836          

HSP 6 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct: 1070 TMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 1124          

HSP 7 Score: 73.9442 bits (180), Expect = 3.096e-13
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 160
            TMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P
Sbjct: 1214 TMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 1266          

HSP 8 Score: 71.633 bits (174), Expect = 1.537e-12
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 166
            TMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR + FD+ +QVQ ISF+  +P G
Sbjct:  927 TMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISFVVQRPSG 980          
BLAST of EY661000 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.096e-13
Identity = 29/53 (54.72%), Postives = 41/53 (77.36%), Query Frame = 2
Query:    2 TMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 160
            TMWKLPM+GCTD +QVL+EV   Q  +P+ ++R++ FDN +QVQC+ FL  +P
Sbjct:  102 TMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRP 154          
The following BLAST results are available for this feature:
BLAST of EY661000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RBS_LARLA1.343e-1669.23Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_MESCR1.754e-1669.81Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS3_PEA2.992e-1673.58Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS2_PEA2.992e-1673.58Ribulose bisphosphate carboxylase small chain 3C, ... [more]
RBS_PINTH6.665e-1667.31Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA1.137e-1566.04Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_PEA7.369e-1567.92Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL1.642e-1465.45Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_EUGGR8.148e-1456.36Ribulose bisphosphate carboxylase small chains, ch... [more]
RBS_CHLMO3.096e-1354.72Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-028-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661000 ID=EY661000; Name=EY661000; organism=Citrus sinensis; type=EST; length=439bp
GACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTT
TGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGA
ATTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGC
TGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCC
ATGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCG
ATCAATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCT
GCTGCTCAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTTTTTTA
TATATATTTTAATAATTGAATCCTTTGTTTTCAGTTTCATTAATCTGGGT
CTCGGATGTTCAGTTTAATGAGTGAAGAAACAAAACCCA
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